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  5. Cre10.g433750

Cre10.g433750


Description : RNA processing.RNA 3-end polyadenylation.poly(A) RNA polymerase


Gene families : OG0001358 (Archaeplastida) Phylogenetic Tree(s): OG0001358_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre10.g433750
Cluster HCCA: Cluster_152

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01008352001 No alias RNA processing.RNA 3-end polyadenylation.poly(A) RNA polymerase 0.02 Archaeplastida
MA_27451g0010 No alias poly(A) RNA polymerase 0.02 Archaeplastida
Pp3c18_13990V3.1 No alias poly(A) polymerase 1 0.02 Archaeplastida
Solyc08g066200.3.1 No alias poly(A) RNA polymerase 0.02 Archaeplastida
Solyc12g095890.2.1 No alias poly(A) RNA polymerase 0.01 Archaeplastida
Zm00001e030659_P006 No alias poly(A) RNA polymerase 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0016779 nucleotidyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000228 nuclear chromosome IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005096 GTPase activator activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
CC GO:0005685 U1 snRNP IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006338 chromatin remodeling IEP Neighborhood
BP GO:0006376 mRNA splice site selection IEP Neighborhood
BP GO:0007030 Golgi organization IEP Neighborhood
MF GO:0008047 enzyme activator activity IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016197 endosomal transport IEP Neighborhood
BP GO:0016482 cytosolic transport IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Neighborhood
MF GO:0030695 GTPase regulator activity IEP Neighborhood
BP GO:0032012 regulation of ARF protein signal transduction IEP Neighborhood
BP GO:0042147 retrograde transport, endosome to Golgi IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
BP GO:0046578 regulation of Ras protein signal transduction IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
CC GO:0097525 spliceosomal snRNP complex IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
CC GO:0120114 Sm-like protein family complex IEP Neighborhood
BP GO:1902531 regulation of intracellular signal transduction IEP Neighborhood
InterPro domains Description Start Stop
IPR007012 PolA_pol_cen_dom 13 358
IPR007010 PolA_pol_RNA-bd_dom 362 470
IPR002934 Polymerase_NTP_transf_dom 74 129
No external refs found!