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  5. Cre12.g520250

Cre12.g520250


Description : RNA biosynthesis.RNA polymerase II-dependent transcription.PAF1C transcription initiation and elongation complex.ELF7/PAF1 component


Gene families : OG0006795 (Archaeplastida) Phylogenetic Tree(s): OG0006795_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g520250
Cluster HCCA: Cluster_62

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00252660 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.02 Archaeplastida
Gb_03648 No alias component ELF7/PAF1 of PAF1C transcription initiation... 0.05 Archaeplastida
LOC_Os08g06070.1 No alias component ELF7/PAF1 of PAF1C transcription initiation... 0.02 Archaeplastida
MA_129211g0010 No alias component ELF7/PAF1 of PAF1C transcription initiation... 0.02 Archaeplastida
Smo441016 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.02 Archaeplastida
Solyc03g121020.3.1 No alias component ELF7/PAF1 of PAF1C transcription initiation... 0.03 Archaeplastida
Zm00001e040227_P001 No alias component ELF7/PAF1 of PAF1C transcription initiation... 0.02 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEA Interproscan
BP GO:0016570 histone modification IEA Interproscan
CC GO:0016593 Cdc73/Paf1 complex IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0031124 mRNA 3'-end processing IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
MF GO:1901567 fatty acid derivative binding IEP Neighborhood
MF GO:1901681 sulfur compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR007133 RNA_pol_II-assoc_Paf1 106 328
No external refs found!