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  5. Cre12.g528950

Cre12.g528950


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.ITS2 rRNA removal.APUM24 rRNA processing factor


Gene families : OG0005051 (Archaeplastida) Phylogenetic Tree(s): OG0005051_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g528950
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00139120 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 Archaeplastida
AT3G16810 APUM24, PUM24 pumilio 24 0.18 Archaeplastida
Cpa|evm.model.tig00000615.61 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 Archaeplastida
GSVIVT01035090001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 Archaeplastida
Gb_02879 No alias APUM24 rRNA processing factor involved in ITS2 rRNA removal 0.07 Archaeplastida
LOC_Os03g61560.1 No alias APUM24 rRNA processing factor involved in ITS2 rRNA removal 0.14 Archaeplastida
MA_10137141g0010 No alias Pumilio homolog 24 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_80959g0020 No alias Pumilio homolog 24 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_9586059g0010 No alias Pumilio homolog 24 OS=Arabidopsis thaliana... 0.06 Archaeplastida
Mp7g01710.1 No alias APUM24 rRNA processing factor involved in ITS2 rRNA removal 0.13 Archaeplastida
Pp3c5_10580V3.1 No alias pumilio 24 0.1 Archaeplastida
Solyc01g065580.4.1 No alias APUM24 rRNA processing factor involved in ITS2 rRNA removal 0.2 Archaeplastida
Zm00001e006271_P002 No alias APUM24 rRNA processing factor involved in ITS2 rRNA removal 0.12 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
BP GO:0008612 peptidyl-lysine modification to peptidyl-hypusine IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0030488 tRNA methylation IEP Neighborhood
BP GO:0030490 maturation of SSU-rRNA IEP Neighborhood
MF GO:0030515 snoRNA binding IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
CC GO:0034457 Mpp10 complex IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
CC GO:0034708 methyltransferase complex IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0043527 tRNA methyltransferase complex IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044452 nucleolar part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 113 144
No external refs found!