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  5. Cre13.g565850

Cre13.g565850


Description : Vesicle trafficking.Coat protein I (COPI) coatomer machinery.coat protein complex.alpha subunit


Gene families : OG0002801 (Archaeplastida) Phylogenetic Tree(s): OG0002801_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre13.g565850
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00220200 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein I (COPI) coatomer... 0.04 Archaeplastida
AT1G62020 No alias Coatomer, alpha subunit 0.09 Archaeplastida
AT2G21390 No alias Coatomer, alpha subunit 0.09 Archaeplastida
Cpa|evm.model.tig00000144.152 No alias Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
GSVIVT01009813001 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.03 Archaeplastida
Gb_09624 No alias subunit alpha of coat protein complex 0.07 Archaeplastida
Gb_15817 No alias subunit alpha of coat protein complex 0.05 Archaeplastida
LOC_Os03g50340.1 No alias subunit alpha of coat protein complex 0.08 Archaeplastida
LOC_Os03g50350.1 No alias subunit alpha of coat protein complex 0.1 Archaeplastida
LOC_Os09g04110.1 No alias subunit alpha of coat protein complex 0.07 Archaeplastida
MA_10428405g0010 No alias subunit alpha of coat protein complex 0.07 Archaeplastida
MA_10429054g0020 No alias subunit alpha of coat protein complex 0.02 Archaeplastida
MA_10429054g0030 No alias Coatomer subunit alpha-1 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Mp3g00050.1 No alias subunit alpha of coat protein complex 0.08 Archaeplastida
Pp3c11_12600V3.1 No alias Coatomer, alpha subunit 0.03 Archaeplastida
Pp3c1_12990V3.1 No alias Coatomer, alpha subunit 0.09 Archaeplastida
Pp3c2_24120V3.1 No alias Coatomer, alpha subunit 0.08 Archaeplastida
Smo77651 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.02 Archaeplastida
Smo85610 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.03 Archaeplastida
Solyc04g080980.2.1 No alias subunit alpha of coat protein complex 0.11 Archaeplastida
Solyc07g032100.3.1 No alias subunit alpha of coat protein complex 0.07 Archaeplastida
Zm00001e005441_P001 No alias subunit alpha of coat protein complex 0.08 Archaeplastida
Zm00001e012192_P001 No alias subunit alpha of coat protein complex 0.09 Archaeplastida
Zm00001e016505_P002 No alias subunit alpha of coat protein complex 0.09 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Neighborhood
CC GO:0000139 Golgi membrane IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004559 alpha-mannosidase activity IEP Neighborhood
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Neighborhood
MF GO:0005048 signal sequence binding IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
BP GO:0006621 protein retention in ER lumen IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Neighborhood
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006904 vesicle docking involved in exocytosis IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
MF GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Neighborhood
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Neighborhood
MF GO:0015923 mannosidase activity IEP Neighborhood
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Neighborhood
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
CC GO:0016459 myosin complex IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
CC GO:0017119 Golgi transport complex IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030119 AP-type membrane coat adaptor complex IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
CC GO:0030126 COPI vesicle coat IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Neighborhood
CC GO:0030131 clathrin adaptor complex IEP Neighborhood
CC GO:0030132 clathrin coat of coated pit IEP Neighborhood
BP GO:0030258 lipid modification IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
BP GO:0032012 regulation of ARF protein signal transduction IEP Neighborhood
BP GO:0032507 maintenance of protein location in cell IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
BP GO:0045185 maintenance of protein location IEP Neighborhood
BP GO:0046578 regulation of Ras protein signal transduction IEP Neighborhood
BP GO:0046834 lipid phosphorylation IEP Neighborhood
BP GO:0046854 phosphatidylinositol phosphorylation IEP Neighborhood
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Neighborhood
MF GO:0046923 ER retention sequence binding IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Neighborhood
BP GO:0051235 maintenance of location IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0051651 maintenance of location in cell IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0065008 regulation of biological quality IEP Neighborhood
MF GO:0070569 uridylyltransferase activity IEP Neighborhood
BP GO:0072595 maintenance of protein localization in organelle IEP Neighborhood
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
BP GO:0140029 exocytic process IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
BP GO:1901264 carbohydrate derivative transport IEP Neighborhood
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Neighborhood
MF GO:1901567 fatty acid derivative binding IEP Neighborhood
MF GO:1901681 sulfur compound binding IEP Neighborhood
BP GO:1902531 regulation of intracellular signal transduction IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 126 163
IPR001680 WD40_repeat 45 79
IPR001680 WD40_repeat 242 277
IPR001680 WD40_repeat 84 121
IPR001680 WD40_repeat 199 232
IPR010714 Coatomer_asu_C 848 1242
IPR006692 Coatomer_WD-assoc_reg 341 769
No external refs found!