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  5. AMTR_s00055p00102180

AMTR_s00055p00102180 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00055.37

Description : Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCB transporter


Gene families : OG0000057 (Archaeplastida) Phylogenetic Tree(s): OG0000057_tree ,
OG_05_0000448 (LandPlants) Phylogenetic Tree(s): OG_05_0000448_tree ,
OG_06_0013683 (SeedPlants) Phylogenetic Tree(s): OG_06_0013683_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00055p00102180
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00018p00193700 evm_27.TU.AmTr_v1... ABC transporter B family member 14 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00018p00193820 evm_27.TU.AmTr_v1... ABC transporter B family member 1 OS=Arabidopsis thaliana 0.03 Archaeplastida
AT1G02530 PGP12 P-glycoprotein 12 0.04 Archaeplastida
AT1G27940 PGP13 P-glycoprotein 13 0.06 Archaeplastida
AT1G28010 ABCB14, ATABCB14, PGP14 P-glycoprotein 14 0.05 Archaeplastida
AT3G28345 No alias ABC transporter family protein 0.03 Archaeplastida
AT3G28380 PGP17 P-glycoprotein 17 0.03 Archaeplastida
AT4G25960 PGP2 P-glycoprotein 2 0.08 Archaeplastida
GSVIVT01013125001 No alias Solute transport.primary active transport.ABC... 0.05 Archaeplastida
GSVIVT01021365001 No alias Solute transport.primary active transport.ABC... 0.02 Archaeplastida
Gb_13906 No alias subfamily ABCB transporter 0.12 Archaeplastida
Gb_13908 No alias ABC transporter B family member 10 OS=Arabidopsis... 0.07 Archaeplastida
LOC_Os02g46680.1 No alias subfamily ABCB transporter 0.11 Archaeplastida
MA_126766g0010 No alias subfamily ABCB transporter 0.04 Archaeplastida
MA_934204g0010 No alias subfamily ABCB transporter 0.03 Archaeplastida
Mp2g02920.1 No alias auxin efflux transporter (ABCB19). subfamily ABCB transporter 0.05 Archaeplastida
Mp7g04390.1 No alias subfamily ABCB transporter 0.04 Archaeplastida
Pp3c1_34680V3.1 No alias P-glycoprotein 10 0.03 Archaeplastida
Pp3c21_18190V3.1 No alias ATP binding cassette subfamily B19 0.03 Archaeplastida
Smo148837 No alias Solute transport.primary active transport.ABC... 0.07 Archaeplastida
Smo230688 No alias Solute transport.primary active transport.ABC... 0.1 Archaeplastida
Smo99885 No alias Solute transport.primary active transport.ABC... 0.03 Archaeplastida
Solyc03g005860.4.1 No alias subfamily ABCB transporter 0.02 Archaeplastida
Solyc03g093650.3.1 No alias subfamily ABCB transporter 0.03 Archaeplastida
Solyc06g009280.1.1 No alias subfamily ABCB transporter 0.03 Archaeplastida
Solyc08g076720.4.1 No alias subfamily ABCB transporter 0.09 Archaeplastida
Solyc11g067310.3.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e014797_P002 No alias subfamily ABCB transporter 0.02 Archaeplastida
Zm00001e020070_P001 No alias subfamily ABCB transporter 0.03 Archaeplastida
Zm00001e023274_P001 No alias subfamily ABCB transporter 0.1 Archaeplastida
Zm00001e040247_P001 No alias subfamily ABCB transporter 0.04 Archaeplastida
Zm00001e041008_P003 No alias auxin efflux transporter (ABCB19). subfamily ABCB transporter 0.03 Archaeplastida
Zm00001e041087_P002 No alias subfamily ABCB transporter 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006810 transport IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016887 ATPase activity IEA Interproscan
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003840 obsolete gamma-glutamyltransferase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
BP GO:0006575 cellular modified amino acid metabolic process IEP Neighborhood
BP GO:0006629 lipid metabolic process IEP Neighborhood
BP GO:0006633 fatty acid biosynthetic process IEP Neighborhood
BP GO:0006749 glutathione metabolic process IEP Neighborhood
BP GO:0006790 sulfur compound metabolic process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like 1061 1186
IPR003439 ABC_transporter-like 422 547
No external refs found!