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  5. Cre16.g662300

Cre16.g662300


Description : RNA processing.RNA splicing.U6-associated LSm accessory ribonucleoprotein complex.LSm3 component


Gene families : OG0007001 (Archaeplastida) Phylogenetic Tree(s): OG0007001_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre16.g662300
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00090360 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U6-associated LSm accessory... 0.02 Archaeplastida
AT1G21190 No alias Small nuclear ribonucleoprotein family protein 0.02 Archaeplastida
AT1G76860 No alias Small nuclear ribonucleoprotein family protein 0.07 Archaeplastida
Cpa|evm.model.tig00020927.50 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.03 Archaeplastida
GSVIVT01034520001 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.01 Archaeplastida
Gb_30400 No alias component LSm3 of U6-associated LSm accessory... 0.01 Archaeplastida
LOC_Os01g64690.1 No alias component LSm3 of U6-associated LSm accessory... 0.08 Archaeplastida
MA_545800g0010 No alias component LSm3 of U6-associated LSm accessory... 0.04 Archaeplastida
Mp8g11310.1 No alias component LSm3 of U6-associated LSm accessory... 0.06 Archaeplastida
Pp3c24_12260V3.1 No alias Small nuclear ribonucleoprotein family protein 0.03 Archaeplastida
Smo107803 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.02 Archaeplastida
Solyc11g005370.2.1 No alias component LSm3 of U6-associated LSm accessory... 0.04 Archaeplastida
Zm00001e019167_P001 No alias component LSm3 of U6-associated LSm accessory... 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0004576 oligosaccharyl transferase activity IEP Neighborhood
MF GO:0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
BP GO:0006405 RNA export from nucleus IEP Neighborhood
BP GO:0006406 mRNA export from nucleus IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006720 isoprenoid metabolic process IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
CC GO:0008250 oligosaccharyltransferase complex IEP Neighborhood
BP GO:0008299 isoprenoid biosynthetic process IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP Neighborhood
BP GO:0009143 nucleoside triphosphate catabolic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
CC GO:0016272 prefoldin complex IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
CC GO:0035145 exon-exon junction complex IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
MF GO:0047429 nucleoside-triphosphate diphosphatase activity IEP Neighborhood
BP GO:0050657 nucleic acid transport IEP Neighborhood
BP GO:0050658 RNA transport IEP Neighborhood
BP GO:0051028 mRNA transport IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:0051168 nuclear export IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051236 establishment of RNA localization IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:1901292 nucleoside phosphate catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 17 93
No external refs found!