Coexpression cluster: Cluster_25 (HCCA)

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006520 cellular amino acid metabolic process 9.43% (10/106) 4.58 0.0 0.0
GO:0006418 tRNA aminoacylation for protein translation 6.6% (7/106) 5.67 0.0 0.0
GO:0016875 ligase activity, forming carbon-oxygen bonds 6.6% (7/106) 5.24 0.0 0.0
GO:0004812 aminoacyl-tRNA ligase activity 6.6% (7/106) 5.24 0.0 0.0
GO:0043039 tRNA aminoacylation 6.6% (7/106) 5.29 0.0 0.0
GO:0043038 amino acid activation 6.6% (7/106) 5.29 0.0 0.0
GO:0043436 oxoacid metabolic process 9.43% (10/106) 3.8 0.0 0.0
GO:0006082 organic acid metabolic process 9.43% (10/106) 3.8 0.0 0.0
GO:0019752 carboxylic acid metabolic process 9.43% (10/106) 3.81 0.0 0.0
GO:0140101 catalytic activity, acting on a tRNA 6.6% (7/106) 4.49 0.0 1e-06
GO:0016070 RNA metabolic process 10.38% (11/106) 3.13 0.0 1e-06
GO:0006399 tRNA metabolic process 6.6% (7/106) 4.29 0.0 1e-06
GO:0009987 cellular process 29.25% (31/106) 1.42 0.0 3e-06
GO:0016874 ligase activity 6.6% (7/106) 4.04 0.0 4e-06
GO:0140098 catalytic activity, acting on RNA 7.55% (8/106) 3.65 0.0 4e-06
GO:0090304 nucleic acid metabolic process 11.32% (12/106) 2.66 0.0 6e-06
GO:0034660 ncRNA metabolic process 6.6% (7/106) 3.87 0.0 7e-06
GO:0016272 prefoldin complex 2.83% (3/106) 6.97 1e-06 1.1e-05
GO:0046483 heterocycle metabolic process 14.15% (15/106) 2.16 1e-06 1.5e-05
GO:0006725 cellular aromatic compound metabolic process 14.15% (15/106) 2.17 1e-06 1.5e-05
GO:1901360 organic cyclic compound metabolic process 14.15% (15/106) 2.13 2e-06 1.8e-05
GO:0008152 metabolic process 31.13% (33/106) 1.22 2e-06 1.8e-05
GO:0008150 biological_process 36.79% (39/106) 1.04 3e-06 3.4e-05
GO:0006547 histidine metabolic process 2.83% (3/106) 6.39 4e-06 3.7e-05
GO:0052803 imidazole-containing compound metabolic process 2.83% (3/106) 6.39 4e-06 3.7e-05
GO:0000105 histidine biosynthetic process 2.83% (3/106) 6.39 4e-06 3.7e-05
GO:0006457 protein folding 3.77% (4/106) 5.14 4e-06 3.8e-05
GO:0044237 cellular metabolic process 24.53% (26/106) 1.38 4e-06 4.1e-05
GO:0034641 cellular nitrogen compound metabolic process 14.15% (15/106) 1.87 1.4e-05 0.00012
GO:0044281 small molecule metabolic process 9.43% (10/106) 2.41 2e-05 0.000161
GO:0009073 aromatic amino acid family biosynthetic process 2.83% (3/106) 5.51 3.3e-05 0.000262
GO:0051082 unfolded protein binding 2.83% (3/106) 5.39 4.4e-05 0.000337
GO:0006139 nucleobase-containing compound metabolic process 11.32% (12/106) 1.97 5.5e-05 0.00041
GO:0009072 aromatic amino acid family metabolic process 2.83% (3/106) 5.16 7.2e-05 0.00052
GO:1901607 alpha-amino acid biosynthetic process 2.83% (3/106) 4.58 0.000255 0.001792
GO:0097159 organic cyclic compound binding 20.75% (22/106) 1.15 0.000275 0.001829
GO:1901363 heterocyclic compound binding 20.75% (22/106) 1.15 0.000275 0.001829
GO:0044238 primary metabolic process 21.7% (23/106) 1.1 0.000313 0.002024
GO:0003674 molecular_function 43.4% (46/106) 0.65 0.000339 0.002137
GO:0003676 nucleic acid binding 11.32% (12/106) 1.67 0.00039 0.002398
GO:1901605 alpha-amino acid metabolic process 2.83% (3/106) 4.27 0.000488 0.002926
GO:0016859 cis-trans isomerase activity 2.83% (3/106) 4.16 0.000609 0.003122
GO:0003755 peptidyl-prolyl cis-trans isomerase activity 2.83% (3/106) 4.16 0.000609 0.003122
GO:0008652 cellular amino acid biosynthetic process 2.83% (3/106) 4.16 0.000609 0.003122
GO:0018208 peptidyl-proline modification 2.83% (3/106) 4.22 0.000546 0.003125
GO:0000413 protein peptidyl-prolyl isomerization 2.83% (3/106) 4.22 0.000546 0.003125
GO:0071704 organic substance metabolic process 21.7% (23/106) 1.04 0.000561 0.003136
GO:0006807 nitrogen compound metabolic process 19.81% (21/106) 1.11 0.000589 0.003219
GO:0005488 binding 28.3% (30/106) 0.85 0.000665 0.00334
GO:0043170 macromolecule metabolic process 16.98% (18/106) 1.16 0.001001 0.004924
GO:0016853 isomerase activity 3.77% (4/106) 3.16 0.001057 0.005096
GO:0018193 peptidyl-amino acid modification 2.83% (3/106) 3.69 0.00162 0.007666
GO:0008380 RNA splicing 1.89% (2/106) 4.93 0.001878 0.008554
GO:0006413 translational initiation 1.89% (2/106) 4.93 0.001878 0.008554
GO:1901564 organonitrogen compound metabolic process 15.09% (16/106) 1.15 0.002077 0.009288
GO:0006396 RNA processing 3.77% (4/106) 2.77 0.002828 0.012423
GO:0003743 translation initiation factor activity 1.89% (2/106) 4.58 0.003071 0.013253
GO:0004827 proline-tRNA ligase activity 0.94% (1/106) 7.39 0.005975 0.020414
GO:0006479 protein methylation 0.94% (1/106) 7.39 0.005975 0.020414
GO:0006480 N-terminal protein amino acid methylation 0.94% (1/106) 7.39 0.005975 0.020414
GO:0008213 protein alkylation 0.94% (1/106) 7.39 0.005975 0.020414
GO:0004424 imidazoleglycerol-phosphate dehydratase activity 0.94% (1/106) 7.39 0.005975 0.020414
GO:0006433 prolyl-tRNA aminoacylation 0.94% (1/106) 7.39 0.005975 0.020414
GO:0006865 amino acid transport 0.94% (1/106) 7.39 0.005975 0.020414
GO:0003333 amino acid transmembrane transport 0.94% (1/106) 7.39 0.005975 0.020414
GO:0097526 spliceosomal tri-snRNP complex 0.94% (1/106) 7.39 0.005975 0.020414
GO:0004399 histidinol dehydrogenase activity 0.94% (1/106) 7.39 0.005975 0.020414
GO:0003917 DNA topoisomerase type I activity 0.94% (1/106) 7.39 0.005975 0.020414
GO:0046540 U4/U6 x U5 tri-snRNP complex 0.94% (1/106) 7.39 0.005975 0.020414
GO:0035145 exon-exon junction complex 0.94% (1/106) 7.39 0.005975 0.020414
GO:0016053 organic acid biosynthetic process 2.83% (3/106) 3.09 0.005288 0.022047
GO:0046394 carboxylic acid biosynthetic process 2.83% (3/106) 3.09 0.005288 0.022047
GO:0008135 translation factor activity, RNA binding 1.89% (2/106) 3.99 0.006896 0.022925
GO:0003824 catalytic activity 24.53% (26/106) 0.71 0.006842 0.023055
GO:0005759 mitochondrial matrix 0.94% (1/106) 6.39 0.011914 0.036637
GO:0120114 Sm-like protein family complex 0.94% (1/106) 6.39 0.011914 0.036637
GO:0097525 spliceosomal snRNP complex 0.94% (1/106) 6.39 0.011914 0.036637
GO:0030532 small nuclear ribonucleoprotein complex 0.94% (1/106) 6.39 0.011914 0.036637
GO:0031365 N-terminal protein amino acid modification 0.94% (1/106) 6.39 0.011914 0.036637
GO:0003723 RNA binding 3.77% (4/106) 2.19 0.011712 0.038414
GO:0015711 organic anion transport 0.94% (1/106) 5.8 0.017819 0.048704
GO:0098656 anion transmembrane transport 0.94% (1/106) 5.8 0.017819 0.048704
GO:1905039 carboxylic acid transmembrane transport 0.94% (1/106) 5.8 0.017819 0.048704
GO:0015849 organic acid transport 0.94% (1/106) 5.8 0.017819 0.048704
GO:0042803 protein homodimerization activity 0.94% (1/106) 5.8 0.017819 0.048704
GO:0000774 adenyl-nucleotide exchange factor activity 0.94% (1/106) 5.8 0.017819 0.048704
GO:0046942 carboxylic acid transport 0.94% (1/106) 5.8 0.017819 0.048704
GO:1903825 organic acid transmembrane transport 0.94% (1/106) 5.8 0.017819 0.048704
GO:0042802 identical protein binding 0.94% (1/106) 5.8 0.017819 0.048704
GO:0044283 small molecule biosynthetic process 2.83% (3/106) 2.5 0.016243 0.049332
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_39 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_53 0.029 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_185 0.022 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_226 0.024 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_50 0.026 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_129 0.025 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_135 0.02 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_242 0.02 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_269 0.023 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_48 0.019 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_71 0.04 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_73 0.039 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_87 0.021 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_91 0.035 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_153 0.022 Archaeplastida Compare
Gingko biloba HCCA Cluster_209 0.033 Archaeplastida Compare
Gingko biloba HCCA Cluster_245 0.031 Archaeplastida Compare
Gingko biloba HCCA Cluster_314 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_7 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_39 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_86 0.024 Archaeplastida Compare
Zea mays HCCA Cluster_111 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_122 0.023 Archaeplastida Compare
Zea mays HCCA Cluster_199 0.023 Archaeplastida Compare
Zea mays HCCA Cluster_252 0.041 Archaeplastida Compare
Zea mays HCCA Cluster_262 0.024 Archaeplastida Compare
Zea mays HCCA Cluster_275 0.025 Archaeplastida Compare
Zea mays HCCA Cluster_290 0.039 Archaeplastida Compare
Zea mays HCCA Cluster_294 0.025 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_20 0.022 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_24 0.031 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_77 0.027 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_85 0.025 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_116 0.03 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_155 0.027 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_160 0.019 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_19 0.031 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_20 0.024 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_99 0.032 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_104 0.025 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_121 0.044 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_155 0.026 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_185 0.019 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_186 0.027 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_252 0.026 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_270 0.021 Archaeplastida Compare
Picea abies HCCA Cluster_84 0.022 Archaeplastida Compare
Picea abies HCCA Cluster_199 0.019 Archaeplastida Compare
Picea abies HCCA Cluster_423 0.025 Archaeplastida Compare
Oryza sativa HCCA Cluster_94 0.025 Archaeplastida Compare
Oryza sativa HCCA Cluster_109 0.067 Archaeplastida Compare
Oryza sativa HCCA Cluster_114 0.019 Archaeplastida Compare
Oryza sativa HCCA Cluster_230 0.02 Archaeplastida Compare
Oryza sativa HCCA Cluster_273 0.036 Archaeplastida Compare
Oryza sativa HCCA Cluster_307 0.023 Archaeplastida Compare
Oryza sativa HCCA Cluster_316 0.036 Archaeplastida Compare
Oryza sativa HCCA Cluster_333 0.025 Archaeplastida Compare
Oryza sativa HCCA Cluster_346 0.025 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_3 0.03 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_31 0.028 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_108 0.023 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_111 0.028 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_123 0.036 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_125 0.023 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_142 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_222 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_237 0.024 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_275 0.019 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_284 0.032 Archaeplastida Compare
Vitis vinifera HCCA Cluster_42 0.024 Archaeplastida Compare
Vitis vinifera HCCA Cluster_60 0.022 Archaeplastida Compare
Vitis vinifera HCCA Cluster_87 0.024 Archaeplastida Compare
Vitis vinifera HCCA Cluster_100 0.023 Archaeplastida Compare
Vitis vinifera HCCA Cluster_155 0.02 Archaeplastida Compare
Vitis vinifera HCCA Cluster_239 0.02 Archaeplastida Compare
Sequences (106) (download table)

InterPro Domains

GO Terms

Family Terms