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  5. AMTR_s00056p00085520

AMTR_s00056p00085520 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00056.60

Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.HD-ZIP III transcription factor


Gene families : OG0000862 (Archaeplastida) Phylogenetic Tree(s): OG0000862_tree ,
OG_05_0000983 (LandPlants) Phylogenetic Tree(s): OG_05_0000983_tree ,
OG_06_0000998 (SeedPlants) Phylogenetic Tree(s): OG_06_0000998_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00056p00085520
Cluster HCCA: Cluster_150

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00155p00069240 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
AT4G32880 HB-8, ATHB8, ATHB-8 homeobox gene 8 0.02 Archaeplastida
GSVIVT01017010001 No alias RNA biosynthesis.transcriptional activation.HB... 0.07 Archaeplastida
GSVIVT01021625001 No alias RNA biosynthesis.transcriptional activation.HB... 0.02 Archaeplastida
GSVIVT01025193001 No alias RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
GSVIVT01035612001 No alias RNA biosynthesis.transcriptional activation.HB... 0.05 Archaeplastida
Gb_02083 No alias transcription factor (HD-ZIP III) 0.03 Archaeplastida
Gb_22761 No alias transcription factor (HD-ZIP III) 0.02 Archaeplastida
LOC_Os03g01890.1 No alias transcription factor (HD-ZIP III) 0.02 Archaeplastida
LOC_Os03g43930.1 No alias transcription factor (HD-ZIP III) 0.04 Archaeplastida
LOC_Os12g41860.1 No alias transcription factor (HD-ZIP III) 0.05 Archaeplastida
Mp1g24140.1 No alias transcription factor (HD-ZIP III) 0.02 Archaeplastida
Pp3c10_19630V3.1 No alias Homeobox-leucine zipper family protein / lipid-binding... 0.04 Archaeplastida
Pp3c16_15450V3.1 No alias Homeobox-leucine zipper family protein / lipid-binding... 0.02 Archaeplastida
Pp3c4_5300V3.1 No alias homeobox gene 8 0.02 Archaeplastida
Smo270954 No alias RNA biosynthesis.transcriptional activation.HB... 0.02 Archaeplastida
Smo77000 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
Solyc02g024070.3.1 No alias transcription factor (HD-ZIP III) 0.04 Archaeplastida
Solyc08g066500.4.1 No alias transcription factor (HD-ZIP III) 0.05 Archaeplastida
Solyc11g069470.3.1 No alias transcription factor (HD-ZIP III) 0.03 Archaeplastida
Solyc12g044410.2.1 No alias transcription factor (HD-ZIP III) 0.02 Archaeplastida
Zm00001e000073_P001 No alias transcription factor (HD-ZIP III) 0.03 Archaeplastida
Zm00001e003226_P004 No alias transcription factor (HD-ZIP III) 0.04 Archaeplastida
Zm00001e004553_P004 No alias transcription factor (HD-ZIP III) 0.04 Archaeplastida
Zm00001e005034_P001 No alias transcription factor (HD-ZIP III) 0.04 Archaeplastida
Zm00001e018118_P002 No alias transcription factor (HD-ZIP III) 0.04 Archaeplastida
Zm00001e039093_P002 No alias transcription factor (HD-ZIP III) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0043565 sequence-specific DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004096 catalase activity IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0004673 protein histidine kinase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006536 glutamate metabolic process IEP Neighborhood
BP GO:0006537 glutamate biosynthetic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008146 sulfotransferase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0009039 urease activity IEP Neighborhood
BP GO:0009064 glutamine family amino acid metabolic process IEP Neighborhood
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Neighborhood
BP GO:0009314 response to radiation IEP Neighborhood
BP GO:0009416 response to light stimulus IEP Neighborhood
BP GO:0009581 detection of external stimulus IEP Neighborhood
BP GO:0009582 detection of abiotic stimulus IEP Neighborhood
BP GO:0009583 detection of light stimulus IEP Neighborhood
BP GO:0009584 detection of visible light IEP Neighborhood
BP GO:0009605 response to external stimulus IEP Neighborhood
BP GO:0009628 response to abiotic stimulus IEP Neighborhood
MF GO:0015930 glutamate synthase activity IEP Neighborhood
MF GO:0016151 nickel cation binding IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Neighborhood
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Neighborhood
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Neighborhood
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0018298 protein-chromophore linkage IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0019627 urea metabolic process IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0043419 urea catabolic process IEP Neighborhood
MF GO:0043531 ADP binding IEP Neighborhood
BP GO:0043605 cellular amide catabolic process IEP Neighborhood
BP GO:0043648 dicarboxylic acid metabolic process IEP Neighborhood
BP GO:0043650 dicarboxylic acid biosynthetic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044282 small molecule catabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0051606 detection of stimulus IEP Neighborhood
BP GO:0071941 nitrogen cycle metabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001356 Homeobox_dom 17 75
IPR002913 START_lipid-bd_dom 161 369
IPR013978 MEKHLA 694 841
No external refs found!