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  5. AMTR_s00056p00135710

AMTR_s00056p00135710 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00056.107

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS7 component


Gene families : OG0002388 (Archaeplastida) Phylogenetic Tree(s): OG0002388_tree ,
OG_05_0002780 (LandPlants) Phylogenetic Tree(s): OG_05_0002780_tree ,
OG_06_0002847 (SeedPlants) Phylogenetic Tree(s): OG_06_0002847_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00056p00135710
Cluster HCCA: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
AT3G02560 No alias Ribosomal protein S7e family protein 0.09 Archaeplastida
AT5G16130 No alias Ribosomal protein S7e family protein 0.07 Archaeplastida
Cpa|evm.model.tig00021682.9 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.09 Archaeplastida
Cre12.g498900 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 Archaeplastida
GSVIVT01008307001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 Archaeplastida
GSVIVT01031018001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 Archaeplastida
Gb_33823 No alias component RPS7 of SSU proteome 0.02 Archaeplastida
LOC_Os03g18570.1 No alias component RPS7 of SSU proteome 0.11 Archaeplastida
LOC_Os03g18580.1 No alias component RPS7 of SSU proteome 0.1 Archaeplastida
LOC_Os05g27940.1 No alias component RPS7 of SSU proteome 0.03 Archaeplastida
Mp6g08120.1 No alias component RPS7 of SSU proteome 0.12 Archaeplastida
Pp3c20_1360V3.1 No alias Ribosomal protein S7e family protein 0.14 Archaeplastida
Pp3c23_18280V3.1 No alias Ribosomal protein S7e family protein 0.14 Archaeplastida
Pp3c24_18220V3.1 No alias Ribosomal protein S7e family protein 0.13 Archaeplastida
Pp3c8_22480V3.1 No alias Ribosomal protein S7e family protein 0.09 Archaeplastida
Smo148446 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 Archaeplastida
Solyc03g119360.3.1 No alias component RPS7 of SSU proteome 0.1 Archaeplastida
Solyc06g069090.3.1 No alias component RPS7 of SSU proteome 0.11 Archaeplastida
Zm00001e001349_P002 No alias component RPS7 of SSU proteome 0.1 Archaeplastida
Zm00001e038391_P004 No alias component RPS7 of SSU proteome 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005853 eukaryotic translation elongation factor 1 complex IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
MF GO:0051287 NAD binding IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000554 Ribosomal_S7e 6 189
No external refs found!