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  5. AMTR_s00057p00172690

AMTR_s00057p00172690 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00057.180

Description : Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0016835 (LandPlants) Phylogenetic Tree(s): OG_05_0016835_tree ,
OG_06_0038111 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00057p00172690
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AT3G49170 EMB2261 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT5G55740 CRR21 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
GSVIVT01014727001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.05 Archaeplastida
GSVIVT01015466001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.03 Archaeplastida
GSVIVT01031251001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.02 Archaeplastida
Gb_33718 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_35407 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
LOC_Os04g02850.1 No alias RNA editing factor (OTP84) 0.08 Archaeplastida
LOC_Os05g49920.1 No alias RNA editing factor (ECB2/VAC1) 0.02 Archaeplastida
LOC_Os10g39460.2 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
LOC_Os11g29230.1 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_10426444g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
MA_18383g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_6527g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Smo76236 No alias Pentatricopeptide repeat-containing protein ELI1,... 0.03 Archaeplastida
Solyc01g095690.2.1 No alias Pentatricopeptide repeat-containing protein At4g01030,... 0.03 Archaeplastida
Solyc02g081900.4.1 No alias RNA editing factor (OTP84) 0.05 Archaeplastida
Solyc03g025700.2.1 No alias OTP70 plastidial RNA splicing factor 0.03 Archaeplastida
Solyc03g111210.4.1 No alias RNA editing factor (OTP80) 0.03 Archaeplastida
Solyc04g076800.3.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Solyc05g013200.1.1 No alias RNA editing factor (OTP85) 0.03 Archaeplastida
Solyc06g035600.3.1 No alias Pentatricopeptide repeat-containing protein At2g22410,... 0.04 Archaeplastida
Zm00001e011417_P001 No alias RNA editing factor (CRR28) 0.09 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
BP GO:0006720 isoprenoid metabolic process IEP Neighborhood
BP GO:0006721 terpenoid metabolic process IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
BP GO:0008299 isoprenoid biosynthetic process IEP Neighborhood
MF GO:0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity IEP Neighborhood
BP GO:0016114 terpenoid biosynthetic process IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
MF GO:0016849 phosphorus-oxygen lyase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 152 201
IPR002885 Pentatricopeptide_repeat 228 252
IPR002885 Pentatricopeptide_repeat 362 390
IPR002885 Pentatricopeptide_repeat 256 286
No external refs found!