1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00057p00189360

AMTR_s00057p00189360 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00057.205

Description : Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0001770 (Archaeplastida) Phylogenetic Tree(s): OG0001770_tree ,
OG_05_0001246 (LandPlants) Phylogenetic Tree(s): OG_05_0001246_tree ,
OG_06_0001272 (SeedPlants) Phylogenetic Tree(s): OG_06_0001272_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00057p00189360
Cluster HCCA: Cluster_259

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01011669001 No alias Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana 0.03 Archaeplastida
Pp3c17_18383V3.1 No alias Ran BP2/NZF zinc finger-like superfamily protein 0.02 Archaeplastida
Solyc03g118680.3.1 No alias RNA editing factor (OZ-type) 0.03 Archaeplastida
Zm00001e009343_P002 No alias No annotation 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005622 intracellular IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006694 steroid biosynthetic process IEP Neighborhood
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Neighborhood
BP GO:0008202 steroid metabolic process IEP Neighborhood
BP GO:0009119 ribonucleoside metabolic process IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
MF GO:0016229 steroid dehydrogenase activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Neighborhood
BP GO:0032324 molybdopterin cofactor biosynthetic process IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Neighborhood
BP GO:0042278 purine nucleoside metabolic process IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043545 molybdopterin cofactor metabolic process IEP Neighborhood
BP GO:0046039 GTP metabolic process IEP Neighborhood
BP GO:0046128 purine ribonucleoside metabolic process IEP Neighborhood
BP GO:0051189 prosthetic group metabolic process IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Neighborhood
BP GO:1901068 guanosine-containing compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001876 Znf_RanBP2 379 407
IPR001876 Znf_RanBP2 413 440
No external refs found!