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  5. AT1G52280

AT1G52280 (AtRABG3d, RABG3d)


Aliases : AtRABG3d, RABG3d

Description : RAB GTPase homolog G3D


Gene families : OG0001137 (Archaeplastida) Phylogenetic Tree(s): OG0001137_tree ,
OG_05_0000971 (LandPlants) Phylogenetic Tree(s): OG_05_0000971_tree ,
OG_06_0000847 (SeedPlants) Phylogenetic Tree(s): OG_06_0000847_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G52280
Cluster HCCA: Cluster_230

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00072050 evm_27.TU.AmTr_v1... Vesicle trafficking.regulation of membrane tethering and... 0.06 Archaeplastida
LOC_Os01g12730.1 No alias G-class RAB GTPase 0.03 Archaeplastida
Solyc03g120750.3.1 No alias G-class RAB GTPase 0.04 Archaeplastida
Zm00001e032146_P002 No alias G-class RAB GTPase 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding ISS Interproscan
CC GO:0005773 vacuole IDA Interproscan
CC GO:0005774 vacuolar membrane IDA Interproscan
CC GO:0005794 Golgi apparatus IDA Interproscan
CC GO:0005886 plasma membrane IDA Interproscan
BP GO:0016192 vesicle-mediated transport RCA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Neighborhood
BP GO:0000271 polysaccharide biosynthetic process IEP Neighborhood
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0005342 organic acid transmembrane transporter activity IEP Neighborhood
BP GO:0005513 detection of calcium ion IEP Neighborhood
CC GO:0005768 endosome IEP Neighborhood
CC GO:0005802 trans-Golgi network IEP Neighborhood
CC GO:0005856 cytoskeleton IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0009593 detection of chemical stimulus IEP Neighborhood
CC GO:0009705 plant-type vacuole membrane IEP Neighborhood
BP GO:0009741 response to brassinosteroid IEP Neighborhood
BP GO:0009825 multidimensional cell growth IEP Neighborhood
BP GO:0010118 stomatal movement IEP Neighborhood
BP GO:0010393 galacturonan metabolic process IEP Neighborhood
BP GO:0010394 homogalacturonan metabolic process IEP Neighborhood
MF GO:0015171 amino acid transmembrane transporter activity IEP Neighborhood
CC GO:0015629 actin cytoskeleton IEP Neighborhood
BP GO:0019722 calcium-mediated signaling IEP Neighborhood
BP GO:0019932 second-messenger-mediated signaling IEP Neighborhood
CC GO:0031410 cytoplasmic vesicle IEP Neighborhood
CC GO:0031982 vesicle IEP Neighborhood
CC GO:0031984 organelle subcompartment IEP Neighborhood
BP GO:0033993 response to lipid IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
BP GO:0045488 pectin metabolic process IEP Neighborhood
MF GO:0046943 carboxylic acid transmembrane transporter activity IEP Neighborhood
MF GO:0051015 actin filament binding IEP Neighborhood
BP GO:0051017 actin filament bundle assembly IEP Neighborhood
BP GO:0051592 response to calcium ion IEP Neighborhood
BP GO:0055067 monovalent inorganic cation homeostasis IEP Neighborhood
BP GO:0055075 potassium ion homeostasis IEP Neighborhood
BP GO:0061572 actin filament bundle organization IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
CC GO:0097708 intracellular vesicle IEP Neighborhood
CC GO:0098791 Golgi subcompartment IEP Neighborhood
InterPro domains Description Start Stop
IPR001806 Small_GTPase 10 176
No external refs found!