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  5. AMTR_s00059p00216110

AMTR_s00059p00216110 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00059.256

Description : Protein biosynthesis.translation elongation.eEF1A aminoacyl-tRNA binding factor


Gene families : OG0000191 (Archaeplastida) Phylogenetic Tree(s): OG0000191_tree ,
OG_05_0000317 (LandPlants) Phylogenetic Tree(s): OG_05_0000317_tree ,
OG_06_0000423 (SeedPlants) Phylogenetic Tree(s): OG_06_0000423_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00059p00216110
Cluster HCCA: Cluster_265

Target Alias Description ECC score Gene Family Method Actions
AT1G07920 No alias GTP binding Elongation factor Tu family protein 0.07 Archaeplastida
AT5G60390 No alias GTP binding Elongation factor Tu family protein 0.08 Archaeplastida
Cpa|evm.model.tig00021352.57 No alias Protein biosynthesis.translation elongation.eEF1A... 0.02 Archaeplastida
GSVIVT01025638001 No alias Elongation factor 1-alpha OS=Zea mays 0.06 Archaeplastida
LOC_Os03g08010.1 No alias aminoacyl-tRNA binding factor (eEF1A) 0.03 Archaeplastida
LOC_Os03g08050.1 No alias aminoacyl-tRNA binding factor (eEF1A) 0.03 Archaeplastida
MA_7085077g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
Mp3g23400.1 No alias aminoacyl-tRNA binding factor (eEF1A) 0.1 Archaeplastida
Pp3c1_23670V3.1 No alias GTP binding Elongation factor Tu family protein 0.02 Archaeplastida
Pp3c1_23850V3.1 No alias GTP binding Elongation factor Tu family protein 0.04 Archaeplastida
Pp3c1_23920V3.1 No alias GTP binding Elongation factor Tu family protein 0.09 Archaeplastida
Smo169717 No alias Protein biosynthesis.translation elongation.eEF1A... 0.03 Archaeplastida
Smo171512 No alias Protein biosynthesis.translation elongation.eEF1A... 0.03 Archaeplastida
Smo270693 No alias Protein biosynthesis.translation elongation.eEF1A... 0.02 Archaeplastida
Solyc06g005060.3.1 No alias aminoacyl-tRNA binding factor (eEF1A) 0.13 Archaeplastida
Solyc11g069097.1.1 No alias aminoacyl-tRNA binding factor (eEF1A) 0.06 Archaeplastida
Solyc11g150146.1.1 No alias aminoacyl-tRNA binding factor (eEF1A) 0.05 Archaeplastida
Zm00001e026762_P001 No alias aminoacyl-tRNA binding factor (eEF1A) 0.04 Archaeplastida
Zm00001e031407_P001 No alias aminoacyl-tRNA binding factor (eEF1A) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR004160 Transl_elong_EFTu/EF1A_C 322 429
IPR004161 EFTu-like_2 248 314
IPR000795 TF_GTP-bd_dom 6 223
No external refs found!