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  5. AMTR_s00061p00202160

AMTR_s00061p00202160 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00061.245

Description : Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana


Gene families : OG0000731 (Archaeplastida) Phylogenetic Tree(s): OG0000731_tree ,
OG_05_0000430 (LandPlants) Phylogenetic Tree(s): OG_05_0000430_tree ,
OG_06_0000220 (SeedPlants) Phylogenetic Tree(s): OG_06_0000220_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00061p00202160
Cluster HCCA: Cluster_190

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00156460 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
AT1G11710 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
AT2G02150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT2G15980 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT4G26680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT5G40400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 Archaeplastida
AT5G59900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
GSVIVT01008360001 No alias Pentatricopeptide repeat-containing protein At5g40400... 0.03 Archaeplastida
GSVIVT01009638001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
GSVIVT01012774001 No alias Pentatricopeptide repeat-containing protein At5g55840... 0.03 Archaeplastida
GSVIVT01025017001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Gb_03188 No alias Pentatricopeptide repeat-containing protein At2g15630,... 0.04 Archaeplastida
Gb_03521 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Gb_07698 No alias Pentatricopeptide repeat-containing protein At3g54980,... 0.05 Archaeplastida
Gb_20239 No alias Pentatricopeptide repeat-containing protein At5g40400... 0.05 Archaeplastida
Gb_28619 No alias Pentatricopeptide repeat-containing protein At1g11710,... 0.05 Archaeplastida
Gb_30066 No alias Pentatricopeptide repeat-containing protein At5g39710... 0.04 Archaeplastida
Gb_35389 No alias Pentatricopeptide repeat-containing protein At4g19440,... 0.03 Archaeplastida
Gb_41726 No alias Pentatricopeptide repeat-containing protein At2g16880... 0.03 Archaeplastida
LOC_Os03g06910.1 No alias Pentatricopeptide repeat-containing protein At5g01110... 0.05 Archaeplastida
LOC_Os03g40690.1 No alias Pentatricopeptide repeat-containing protein At5g55840... 0.03 Archaeplastida
LOC_Os05g19390.1 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
LOC_Os12g21930.1 No alias Pentatricopeptide repeat-containing protein At2g15980... 0.04 Archaeplastida
MA_111225g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_140877g0010 No alias Pentatricopeptide repeat-containing protein At5g39710... 0.03 Archaeplastida
MA_278706g0010 No alias Pentatricopeptide repeat-containing protein At2g15630,... 0.03 Archaeplastida
MA_302333g0010 No alias Pentatricopeptide repeat-containing protein At5g55840... 0.02 Archaeplastida
MA_59385g0010 No alias Pentatricopeptide repeat-containing protein At3g54980,... 0.05 Archaeplastida
MA_6175g0010 No alias Pentatricopeptide repeat-containing protein At5g01110... 0.05 Archaeplastida
MA_64750g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_774352g0010 No alias Pentatricopeptide repeat-containing protein At4g26680,... 0.03 Archaeplastida
Solyc02g021270.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
Solyc07g047620.3.1 No alias Pentatricopeptide repeat-containing protein At4g26680,... 0.06 Archaeplastida
Solyc11g073270.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Zm00001e035584_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.08 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0008219 cell death IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051258 protein polymerization IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 503 552
IPR002885 Pentatricopeptide_repeat 575 622
IPR002885 Pentatricopeptide_repeat 433 482
IPR002885 Pentatricopeptide_repeat 366 412
IPR002885 Pentatricopeptide_repeat 894 936
IPR002885 Pentatricopeptide_repeat 958 1005
IPR002885 Pentatricopeptide_repeat 153 201
IPR002885 Pentatricopeptide_repeat 293 342
IPR002885 Pentatricopeptide_repeat 224 272
IPR002885 Pentatricopeptide_repeat 678 726
IPR002885 Pentatricopeptide_repeat 86 115
IPR002885 Pentatricopeptide_repeat 821 847
IPR002885 Pentatricopeptide_repeat 850 881
IPR002885 Pentatricopeptide_repeat 639 672
No external refs found!