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  5. AMTR_s00061p00208140

AMTR_s00061p00208140 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00061.257

Description : RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.PARN poly(A)-specific ribonuclease


Gene families : OG0001784 (Archaeplastida) Phylogenetic Tree(s): OG0001784_tree ,
OG_05_0003762 (LandPlants) Phylogenetic Tree(s): OG_05_0003762_tree ,
OG_06_0005512 (SeedPlants) Phylogenetic Tree(s): OG_06_0005512_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00061p00208140
Cluster HCCA: Cluster_231

Target Alias Description ECC score Gene Family Method Actions
AT1G55870 AHG2, ATPARN Polynucleotidyl transferase, ribonuclease H-like... 0.03 Archaeplastida
AT3G25430 No alias Polynucleotidyl transferase, ribonuclease H-like... 0.03 Archaeplastida
Gb_17890 No alias Poly(A)-specific ribonuclease PARN-like OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os08g34160.1 No alias Poly(A)-specific ribonuclease PARN-like OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e041044_P006 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000015 phosphopyruvate hydratase complex IEP Neighborhood
CC GO:0000428 DNA-directed RNA polymerase complex IEP Neighborhood
BP GO:0000966 RNA 5'-end processing IEP Neighborhood
BP GO:0001682 tRNA 5'-leader removal IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003747 translation release factor activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004526 ribonuclease P activity IEP Neighborhood
MF GO:0004549 tRNA-specific ribonuclease activity IEP Neighborhood
MF GO:0004634 phosphopyruvate hydratase activity IEP Neighborhood
MF GO:0004659 prenyltransferase activity IEP Neighborhood
MF GO:0005337 nucleoside transmembrane transporter activity IEP Neighborhood
CC GO:0005666 RNA polymerase III complex IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006383 transcription by RNA polymerase III IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006415 translational termination IEP Neighborhood
BP GO:0006417 regulation of translation IEP Neighborhood
BP GO:0006448 regulation of translational elongation IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008079 translation termination factor activity IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008373 sialyltransferase activity IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
BP GO:0010608 posttranscriptional regulation of gene expression IEP Neighborhood
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016149 translation release factor activity, codon specific IEP Neighborhood
CC GO:0016272 prefoldin complex IEP Neighborhood
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Neighborhood
MF GO:0016836 hydro-lyase activity IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Neighborhood
BP GO:0017182 peptidyl-diphthamide metabolic process IEP Neighborhood
BP GO:0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018202 peptidyl-histidine modification IEP Neighborhood
BP GO:0022411 cellular component disassembly IEP Neighborhood
CC GO:0030880 RNA polymerase complex IEP Neighborhood
BP GO:0032268 regulation of cellular protein metabolic process IEP Neighborhood
BP GO:0032984 protein-containing complex disassembly IEP Neighborhood
BP GO:0034248 regulation of cellular amide metabolic process IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034471 ncRNA 5'-end processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0043624 cellular protein complex disassembly IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044445 cytosolic part IEP Neighborhood
BP GO:0051246 regulation of protein metabolic process IEP Neighborhood
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
BP GO:0099116 tRNA 5'-end processing IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
BP GO:1900247 regulation of cytoplasmic translational elongation IEP Neighborhood
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
BP GO:2000765 regulation of cytoplasmic translation IEP Neighborhood
InterPro domains Description Start Stop
IPR006941 RNase_CAF1 34 466
No external refs found!