AT1G53090 (SPA4)


Aliases : SPA4

Description : SPA1-related 4


Gene families : OG0000790 (Archaeplastida) Phylogenetic Tree(s): OG0000790_tree ,
OG_05_0001763 (LandPlants) Phylogenetic Tree(s): OG_05_0001763_tree ,
OG_06_0005180 (SeedPlants) Phylogenetic Tree(s): OG_06_0005180_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G53090
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00068p00174010 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.07 Archaeplastida
AT4G11110 SPA2 SPA1-related 2 0.03 Archaeplastida
Cre02.g085050 No alias E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01007271001 No alias External stimuli response.light.red/far red... 0.04 Archaeplastida
GSVIVT01019492001 No alias External stimuli response.light.red/far red... 0.05 Archaeplastida
LOC_Os01g52640.3 No alias protein kinase (PEK) 0.07 Archaeplastida
LOC_Os02g53140.1 No alias protein kinase (PEK). component COP1 of COP1-SPA E3... 0.05 Archaeplastida
Mp3g25460.1 No alias protein kinase (PEK). regulator component SPA of... 0.02 Archaeplastida
Mp5g12010.1 No alias protein kinase (PEK). component COP1 of COP1-SPA E3... 0.02 Archaeplastida
Pp3c11_15840V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Archaeplastida
Pp3c16_19410V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.06 Archaeplastida
Pp3c1_13190V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.04 Archaeplastida
Pp3c2_15860V3.1 No alias SPA1-related 3 0.05 Archaeplastida
Pp3c2_24290V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Archaeplastida
Pp3c5_26150V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Archaeplastida
Pp3c6_5030V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Archaeplastida
Pp3c7_14320V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Archaeplastida
Smo101888 No alias Protein modification.phosphorylation.PEK kinase 0.02 Archaeplastida
Smo98534 No alias External stimuli response.light.red/far red... 0.04 Archaeplastida
Solyc07g063120.4.1 No alias protein kinase (PEK). regulator component SPA of... 0.05 Archaeplastida
Solyc08g081990.3.1 No alias protein kinase (PEK). regulator component SPA of... 0.04 Archaeplastida
Solyc12g013840.3.1 No alias protein kinase (PEK). regulator component SPA of... 0.11 Archaeplastida
Zm00001e015983_P001 No alias protein kinase (PEK). component COP1 of COP1-SPA E3... 0.03 Archaeplastida
Zm00001e019928_P005 No alias protein kinase (PEK). regulator component SPA of... 0.07 Archaeplastida
Zm00001e023792_P001 No alias No annotation 0.05 Archaeplastida
Zm00001e028209_P002 No alias protein kinase (PEK). regulator component SPA of... 0.08 Archaeplastida
Zm00001e032481_P001 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004871 obsolete signal transducer activity ISS Interproscan
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005834 heterotrimeric G-protein complex ISS Interproscan
BP GO:0006281 DNA repair RCA Interproscan
BP GO:0010100 negative regulation of photomorphogenesis RCA Interproscan
MF GO:0042802 identical protein binding IPI Interproscan
BP GO:0048608 reproductive structure development RCA Interproscan
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex ISS Interproscan
Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Neighborhood
BP GO:0000304 response to singlet oxygen IEP Neighborhood
BP GO:0000913 preprophase band assembly IEP Neighborhood
BP GO:0001101 response to acid chemical IEP Neighborhood
BP GO:0001666 response to hypoxia IEP Neighborhood
BP GO:0002239 response to oomycetes IEP Neighborhood
MF GO:0003951 NAD+ kinase activity IEP Neighborhood
MF GO:0004008 copper-exporting ATPase activity IEP Neighborhood
MF GO:0004033 aldo-keto reductase (NADP) activity IEP Neighborhood
MF GO:0004176 ATP-dependent peptidase activity IEP Neighborhood
MF GO:0004645 phosphorylase activity IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
MF GO:0004675 transmembrane receptor protein serine/threonine kinase activity IEP Neighborhood
MF GO:0004709 MAP kinase kinase kinase activity IEP Neighborhood
MF GO:0004888 transmembrane signaling receptor activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005216 ion channel activity IEP Neighborhood
MF GO:0005217 intracellular ligand-gated ion channel activity IEP Neighborhood
MF GO:0005242 inward rectifier potassium channel activity IEP Neighborhood
MF GO:0005249 voltage-gated potassium channel activity IEP Neighborhood
MF GO:0005261 cation channel activity IEP Neighborhood
MF GO:0005262 calcium channel activity IEP Neighborhood
MF GO:0005267 potassium channel activity IEP Neighborhood
MF GO:0005315 inorganic phosphate transmembrane transporter activity IEP Neighborhood
MF GO:0005375 copper ion transmembrane transporter activity IEP Neighborhood
MF GO:0005385 zinc ion transmembrane transporter activity IEP Neighborhood
MF GO:0005388 calcium-transporting ATPase activity IEP Neighborhood
BP GO:0006066 alcohol metabolic process IEP Neighborhood
BP GO:0006206 pyrimidine nucleobase metabolic process IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006473 protein acetylation IEP Neighborhood
BP GO:0006475 internal protein amino acid acetylation IEP Neighborhood
BP GO:0006643 membrane lipid metabolic process IEP Neighborhood
BP GO:0006664 glycolipid metabolic process IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006816 calcium ion transport IEP Neighborhood
BP GO:0006873 cellular ion homeostasis IEP Neighborhood
BP GO:0006874 cellular calcium ion homeostasis IEP Neighborhood
BP GO:0006875 cellular metal ion homeostasis IEP Neighborhood
BP GO:0006878 cellular copper ion homeostasis IEP Neighborhood
BP GO:0006952 defense response IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
BP GO:0007584 response to nutrient IEP Neighborhood
BP GO:0007602 phototransduction IEP Neighborhood
MF GO:0008066 glutamate receptor activity IEP Neighborhood
MF GO:0008106 alcohol dehydrogenase (NADP+) activity IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
BP GO:0008655 pyrimidine-containing compound salvage IEP Neighborhood
MF GO:0008905 mannose-phosphate guanylyltransferase activity IEP Neighborhood
MF GO:0008928 mannose-1-phosphate guanylyltransferase (GDP) activity IEP Neighborhood
MF GO:0009011 starch synthase activity IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009112 nucleobase metabolic process IEP Neighborhood
BP GO:0009247 glycolipid biosynthetic process IEP Neighborhood
BP GO:0009314 response to radiation IEP Neighborhood
BP GO:0009411 response to UV IEP Neighborhood
BP GO:0009416 response to light stimulus IEP Neighborhood
CC GO:0009504 cell plate IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009526 plastid envelope IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
BP GO:0009582 detection of abiotic stimulus IEP Neighborhood
BP GO:0009583 detection of light stimulus IEP Neighborhood
BP GO:0009585 red, far-red light phototransduction IEP Neighborhood
BP GO:0009628 response to abiotic stimulus IEP Neighborhood
BP GO:0009637 response to blue light IEP Neighborhood
BP GO:0009648 photoperiodism IEP Neighborhood
BP GO:0009651 response to salt stress IEP Neighborhood
BP GO:0009657 plastid organization IEP Neighborhood
BP GO:0009658 chloroplast organization IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009737 response to abscisic acid IEP Neighborhood
BP GO:0009739 response to gibberellin IEP Neighborhood
BP GO:0009744 response to sucrose IEP Neighborhood
BP GO:0009751 response to salicylic acid IEP Neighborhood
BP GO:0009753 response to jasmonic acid IEP Neighborhood
BP GO:0009812 flavonoid metabolic process IEP Neighborhood
BP GO:0009813 flavonoid biosynthetic process IEP Neighborhood
BP GO:0009902 chloroplast relocation IEP Neighborhood
BP GO:0009903 chloroplast avoidance movement IEP Neighborhood
BP GO:0009904 chloroplast accumulation movement IEP Neighborhood
BP GO:0010021 amylopectin biosynthetic process IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
BP GO:0010114 response to red light IEP Neighborhood
BP GO:0010218 response to far red light IEP Neighborhood
BP GO:0010224 response to UV-B IEP Neighborhood
BP GO:0010264 myo-inositol hexakisphosphate biosynthetic process IEP Neighborhood
BP GO:0010304 PSII associated light-harvesting complex II catabolic process IEP Neighborhood
BP GO:0010343 singlet oxygen-mediated programmed cell death IEP Neighborhood
MF GO:0010471 GDP-galactose:mannose-1-phosphate guanylyltransferase activity IEP Neighborhood
MF GO:0010472 GDP-galactose:glucose-1-phosphate guanylyltransferase activity IEP Neighborhood
MF GO:0010473 GDP-galactose:myoinositol-1-phosphate guanylyltransferase activity IEP Neighborhood
MF GO:0010474 glucose-1-phosphate guanylyltransferase (GDP) activity IEP Neighborhood
MF GO:0010475 galactose-1-phosphate guanylyltransferase (GDP) activity IEP Neighborhood
MF GO:0015085 calcium ion transmembrane transporter activity IEP Neighborhood
MF GO:0015086 cadmium ion transmembrane transporter activity IEP Neighborhood
MF GO:0015205 nucleobase transmembrane transporter activity IEP Neighborhood
MF GO:0015267 channel activity IEP Neighborhood
MF GO:0015276 ligand-gated ion channel activity IEP Neighborhood
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Neighborhood
MF GO:0015434 cadmium-transporting ATPase activity IEP Neighborhood
MF GO:0015633 zinc-transporting ATPase activity IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Neighborhood
MF GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
BP GO:0016573 histone acetylation IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016987 sigma factor activity IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0017144 drug metabolic process IEP Neighborhood
BP GO:0018393 internal peptidyl-lysine acetylation IEP Neighborhood
BP GO:0018394 peptidyl-lysine acetylation IEP Neighborhood
MF GO:0019199 transmembrane receptor protein kinase activity IEP Neighborhood
BP GO:0019374 galactolipid metabolic process IEP Neighborhood
BP GO:0019375 galactolipid biosynthetic process IEP Neighborhood
BP GO:0019637 organophosphate metabolic process IEP Neighborhood
BP GO:0019725 cellular homeostasis IEP Neighborhood
BP GO:0019750 chloroplast localization IEP Neighborhood
BP GO:0019751 polyol metabolic process IEP Neighborhood
BP GO:0019852 L-ascorbic acid metabolic process IEP Neighborhood
BP GO:0019853 L-ascorbic acid biosynthetic process IEP Neighborhood
BP GO:0019856 pyrimidine nucleobase biosynthetic process IEP Neighborhood
MF GO:0019904 protein domain specific binding IEP Neighborhood
MF GO:0022803 passive transmembrane transporter activity IEP Neighborhood
MF GO:0022834 ligand-gated channel activity IEP Neighborhood
MF GO:0022836 gated channel activity IEP Neighborhood
MF GO:0022838 substrate-specific channel activity IEP Neighborhood
MF GO:0022839 ion gated channel activity IEP Neighborhood
MF GO:0022843 voltage-gated cation channel activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Neighborhood
BP GO:0030003 cellular cation homeostasis IEP Neighborhood
MF GO:0030275 LRR domain binding IEP Neighborhood
MF GO:0030551 cyclic nucleotide binding IEP Neighborhood
CC GO:0031967 organelle envelope IEP Neighborhood
CC GO:0031975 envelope IEP Neighborhood
BP GO:0032922 circadian regulation of gene expression IEP Neighborhood
BP GO:0032958 inositol phosphate biosynthetic process IEP Neighborhood
BP GO:0033517 myo-inositol hexakisphosphate metabolic process IEP Neighborhood
BP GO:0033993 response to lipid IEP Neighborhood
BP GO:0034285 response to disaccharide IEP Neighborhood
MF GO:0035251 UDP-glucosyltransferase activity IEP Neighborhood
BP GO:0036293 response to decreased oxygen levels IEP Neighborhood
BP GO:0036473 cell death in response to oxidative stress IEP Neighborhood
MF GO:0038023 signaling receptor activity IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
BP GO:0042391 regulation of membrane potential IEP Neighborhood
BP GO:0042592 homeostatic process IEP Neighborhood
BP GO:0043100 pyrimidine nucleobase salvage IEP Neighborhood
BP GO:0043200 response to amino acid IEP Neighborhood
MF GO:0043425 bHLH transcription factor binding IEP Neighborhood
BP GO:0043543 protein acylation IEP Neighborhood
BP GO:0043647 inositol phosphate metabolic process IEP Neighborhood
MF GO:0043682 copper-transporting ATPase activity IEP Neighborhood
BP GO:0043966 histone H3 acetylation IEP Neighborhood
BP GO:0044257 cellular protein catabolic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
BP GO:0046112 nucleobase biosynthetic process IEP Neighborhood
BP GO:0046165 alcohol biosynthetic process IEP Neighborhood
BP GO:0046173 polyol biosynthetic process IEP Neighborhood
BP GO:0046467 membrane lipid biosynthetic process IEP Neighborhood
MF GO:0046524 sucrose-phosphate synthase activity IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
MF GO:0046873 metal ion transmembrane transporter activity IEP Neighborhood
MF GO:0047501 (+)-neomenthol dehydrogenase activity IEP Neighborhood
MF GO:0047504 (-)-menthol dehydrogenase activity IEP Neighborhood
BP GO:0048571 long-day photoperiodism IEP Neighborhood
BP GO:0048572 short-day photoperiodism IEP Neighborhood
BP GO:0048573 photoperiodism, flowering IEP Neighborhood
BP GO:0048574 long-day photoperiodism, flowering IEP Neighborhood
BP GO:0048575 short-day photoperiodism, flowering IEP Neighborhood
BP GO:0048878 chemical homeostasis IEP Neighborhood
BP GO:0050801 ion homeostasis IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0051644 plastid localization IEP Neighborhood
BP GO:0051656 establishment of organelle localization IEP Neighborhood
BP GO:0051667 establishment of plastid localization IEP Neighborhood
BP GO:0052482 defense response by cell wall thickening IEP Neighborhood
BP GO:0052544 defense response by callose deposition in cell wall IEP Neighborhood
BP GO:0055065 metal ion homeostasis IEP Neighborhood
BP GO:0055069 zinc ion homeostasis IEP Neighborhood
BP GO:0055070 copper ion homeostasis IEP Neighborhood
BP GO:0055076 transition metal ion homeostasis IEP Neighborhood
BP GO:0055080 cation homeostasis IEP Neighborhood
BP GO:0055082 cellular chemical homeostasis IEP Neighborhood
MF GO:0060089 molecular transducer activity IEP Neighborhood
BP GO:0070482 response to oxygen levels IEP Neighborhood
MF GO:0070568 guanylyltransferase activity IEP Neighborhood
BP GO:0070838 divalent metal ion transport IEP Neighborhood
BP GO:0071214 cellular response to abiotic stimulus IEP Neighborhood
BP GO:0071230 cellular response to amino acid stimulus IEP Neighborhood
BP GO:0071417 cellular response to organonitrogen compound IEP Neighborhood
BP GO:0071478 cellular response to radiation IEP Neighborhood
BP GO:0071482 cellular response to light stimulus IEP Neighborhood
BP GO:0071483 cellular response to blue light IEP Neighborhood
BP GO:0072507 divalent inorganic cation homeostasis IEP Neighborhood
MF GO:0072509 divalent inorganic cation transmembrane transporter activity IEP Neighborhood
BP GO:0072511 divalent inorganic cation transport IEP Neighborhood
MF GO:0080046 quercetin 4'-O-glucosyltransferase activity IEP Neighborhood
MF GO:0080048 GDP-D-glucose phosphorylase activity IEP Neighborhood
BP GO:0080183 response to photooxidative stress IEP Neighborhood
BP GO:0090407 organophosphate biosynthetic process IEP Neighborhood
BP GO:0097305 response to alcohol IEP Neighborhood
BP GO:0097468 programmed cell death in response to reactive oxygen species IEP Neighborhood
BP GO:0098771 inorganic ion homeostasis IEP Neighborhood
MF GO:0099094 ligand-gated cation channel activity IEP Neighborhood
BP GO:0104004 cellular response to environmental stimulus IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
BP GO:1901615 organic hydroxy compound metabolic process IEP Neighborhood
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Neighborhood
BP GO:1901699 cellular response to nitrogen compound IEP Neighborhood
BP GO:1901700 response to oxygen-containing compound IEP Neighborhood
BP GO:1903509 liposaccharide metabolic process IEP Neighborhood
BP GO:2000028 regulation of photoperiodism, flowering IEP Neighborhood
BP GO:2000896 amylopectin metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 567 605
IPR001680 WD40_repeat 655 689
No external refs found!