AMTR_s00063p00087380 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00063.12

Description : Chromatin organisation.chromatin remodeling complexes.ATPase core components.SSO1653-like group.SHPRH chromatin remodeling factor

Gene families : OG0004869 (Archaeplastida) Phylogenetic Tree(s): OG0004869_tree ,
OG_05_0005737 (LandPlants) Phylogenetic Tree(s): OG_05_0005737_tree ,
OG_06_0007448 (SeedPlants) Phylogenetic Tree(s): OG_06_0007448_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00063p00087380
Cluster	HCCA: Cluster_246

Target	Alias	Description	ECC score	Gene Family Method
AT3G54460	No alias	SNF2 domain-containing protein / helicase...	0.02	Archaeplastida
GSVIVT01013494001	No alias	Chromatin organisation.chromatin remodeling...	0.02	Archaeplastida
MA_64225g0010	No alias	chromatin remodeling factor (SHPRH)	0.04	Archaeplastida
Solyc11g005250.3.1	No alias	chromatin remodeling factor (SHPRH)	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0000176	nuclear exosome (RNase complex)	IEP	Neighborhood
CC	GO:0000178	exosome (RNase complex)	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0004386	helicase activity	IEP	Neighborhood
MF	GO:0004527	exonuclease activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
BP	GO:0006397	mRNA processing	IEP	Neighborhood
MF	GO:0008408	3'-5' exonuclease activity	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
BP	GO:0016071	mRNA metabolic process	IEP	Neighborhood
MF	GO:0016462	pyrophosphatase activity	IEP	Neighborhood
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Neighborhood
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Neighborhood
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
CC	GO:1905354	exoribonuclease complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000330	SNF2_N	308	969
IPR011124	Znf_CW	575	620

External Links

No external refs found!