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  5. AMTR_s00066p00023060

AMTR_s00066p00023060 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00066.4

Description : RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.THA8 splicing factor


Gene families : OG0000306 (Archaeplastida) Phylogenetic Tree(s): OG0000306_tree ,
OG_05_0000732 (LandPlants) Phylogenetic Tree(s): OG_05_0000732_tree ,
OG_06_0002392 (SeedPlants) Phylogenetic Tree(s): OG_06_0002392_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00066p00023060
Cluster HCCA: Cluster_262

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01023856001 No alias Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... 0.03 Archaeplastida
Mp1g18030.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e010524_P001 No alias THA8 plastidial RNA splicing factor 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
CC GO:0005789 endoplasmic reticulum membrane IEP Neighborhood
CC GO:0005856 cytoskeleton IEP Neighborhood
CC GO:0005885 Arp2/3 protein complex IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006497 protein lipidation IEP Neighborhood
BP GO:0006505 GPI anchor metabolic process IEP Neighborhood
BP GO:0006506 GPI anchor biosynthetic process IEP Neighborhood
BP GO:0006643 membrane lipid metabolic process IEP Neighborhood
BP GO:0006650 glycerophospholipid metabolic process IEP Neighborhood
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Neighborhood
BP GO:0006664 glycolipid metabolic process IEP Neighborhood
BP GO:0006665 sphingolipid metabolic process IEP Neighborhood
BP GO:0006672 ceramide metabolic process IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0007015 actin filament organization IEP Neighborhood
BP GO:0008064 regulation of actin polymerization or depolymerization IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
BP GO:0008654 phospholipid biosynthetic process IEP Neighborhood
BP GO:0009132 nucleoside diphosphate metabolic process IEP Neighborhood
BP GO:0009186 deoxyribonucleoside diphosphate metabolic process IEP Neighborhood
BP GO:0009247 glycolipid biosynthetic process IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0010638 positive regulation of organelle organization IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
BP GO:0019637 organophosphate metabolic process IEP Neighborhood
BP GO:0030832 regulation of actin filament length IEP Neighborhood
BP GO:0030833 regulation of actin filament polymerization IEP Neighborhood
BP GO:0030838 positive regulation of actin filament polymerization IEP Neighborhood
BP GO:0031334 positive regulation of protein complex assembly IEP Neighborhood
BP GO:0032271 regulation of protein polymerization IEP Neighborhood
BP GO:0032273 positive regulation of protein polymerization IEP Neighborhood
BP GO:0032535 regulation of cellular component size IEP Neighborhood
BP GO:0032956 regulation of actin cytoskeleton organization IEP Neighborhood
BP GO:0032970 regulation of actin filament-based process IEP Neighborhood
BP GO:0033043 regulation of organelle organization IEP Neighborhood
BP GO:0034314 Arp2/3 complex-mediated actin nucleation IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043254 regulation of protein complex assembly IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044087 regulation of cellular component biogenesis IEP Neighborhood
BP GO:0044089 positive regulation of cellular component biogenesis IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044255 cellular lipid metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
BP GO:0045010 actin nucleation IEP Neighborhood
BP GO:0045017 glycerolipid biosynthetic process IEP Neighborhood
BP GO:0046467 membrane lipid biosynthetic process IEP Neighborhood
BP GO:0046474 glycerophospholipid biosynthetic process IEP Neighborhood
BP GO:0046486 glycerolipid metabolic process IEP Neighborhood
BP GO:0046488 phosphatidylinositol metabolic process IEP Neighborhood
BP GO:0048518 positive regulation of biological process IEP Neighborhood
BP GO:0048522 positive regulation of cellular process IEP Neighborhood
BP GO:0051128 regulation of cellular component organization IEP Neighborhood
BP GO:0051130 positive regulation of cellular component organization IEP Neighborhood
BP GO:0051493 regulation of cytoskeleton organization IEP Neighborhood
BP GO:0051495 positive regulation of cytoskeleton organization IEP Neighborhood
BP GO:0090066 regulation of anatomical structure size IEP Neighborhood
BP GO:0097435 supramolecular fiber organization IEP Neighborhood
BP GO:0110053 regulation of actin filament organization IEP Neighborhood
BP GO:1902903 regulation of supramolecular fiber organization IEP Neighborhood
BP GO:1902905 positive regulation of supramolecular fiber organization IEP Neighborhood
BP GO:1903509 liposaccharide metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 149 196
No external refs found!