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Aliases : evm_27.TU.AmTr_v1.0_scaffold00066.93
Description : Putative pentatricopeptide repeat-containing protein At1g53330 OS=Arabidopsis thaliana
Gene families : OG0000198 (Archaeplastida) Phylogenetic Tree(s): OG0000198_tree ,
OG_05_0000086 (LandPlants) Phylogenetic Tree(s): OG_05_0000086_tree ,
OG_06_0000170 (SeedPlants) Phylogenetic Tree(s): OG_06_0000170_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AMTR_s00066p00107660 | |
| Cluster | HCCA: Cluster_257 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G07740 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Archaeplastida | |
| AT1G53330 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.06 | Archaeplastida | |
| AT3G14580 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Archaeplastida | |
| AT5G64320 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Archaeplastida | |
| Gb_05553 | No alias | group-II intron mitochondrial splicing factor (MISF74) | 0.02 | Archaeplastida | |
| Gb_12002 | No alias | Pentatricopeptide repeat-containing protein At3g48810... | 0.05 | Archaeplastida | |
| Gb_14900 | No alias | Pentatricopeptide repeat-containing protein At4g20090... | 0.02 | Archaeplastida | |
| Gb_21920 | No alias | Pentatricopeptide repeat-containing protein At1g07740,... | 0.03 | Archaeplastida | |
| Gb_23263 | No alias | Pentatricopeptide repeat-containing protein At5g46100... | 0.03 | Archaeplastida | |
| Gb_35219 | No alias | Pentatricopeptide repeat-containing protein At5g18475... | 0.02 | Archaeplastida | |
| LOC_Os05g04160.1 | No alias | Pentatricopeptide repeat-containing protein At3g48810... | 0.03 | Archaeplastida | |
| LOC_Os08g39050.1 | No alias | Pentatricopeptide repeat-containing protein At1g80150,... | 0.03 | Archaeplastida | |
| MA_10316984g0010 | No alias | group-II intron mitochondrial splicing factor (MISF74) | 0.03 | Archaeplastida | |
| MA_137206g0010 | No alias | PPR-type mitochondrial ribosome regulatory protein (PPR336) | 0.02 | Archaeplastida | |
| MA_525159g0010 | No alias | Pentatricopeptide repeat-containing protein At1g07740,... | 0.03 | Archaeplastida | |
| MA_57592g0010 | No alias | Pentatricopeptide repeat-containing protein At3g09060... | 0.02 | Archaeplastida | |
| MA_71816g0020 | No alias | Pentatricopeptide repeat-containing protein At3g14580,... | 0.03 | Archaeplastida | |
| MA_742945g0010 | No alias | Pentatricopeptide repeat-containing protein At5g16420,... | 0.03 | Archaeplastida | |
| MA_80720g0010 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | Archaeplastida | |
| Solyc02g077650.2.1 | No alias | Pentatricopeptide repeat-containing protein At5g46100... | 0.05 | Archaeplastida | |
| Solyc02g079830.1.1 | No alias | Pentatricopeptide repeat-containing protein At3g13160,... | 0.03 | Archaeplastida | |
| Solyc03g031460.1.1 | No alias | Pentatricopeptide repeat-containing protein At3g13160,... | 0.02 | Archaeplastida | |
| Solyc09g061760.1.1 | No alias | Pentatricopeptide repeat-containing protein At2g17525,... | 0.03 | Archaeplastida | |
| Solyc12g014330.1.1 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.06 | Archaeplastida | |
| Zm00001e003447_P001 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida | |
| Zm00001e011589_P001 | No alias | no hits & (original description: none) | 0.04 | Archaeplastida | |
| Zm00001e028938_P001 | No alias | Pentatricopeptide repeat-containing protein At1g55890,... | 0.04 | Archaeplastida | |
| Zm00001e030818_P001 | No alias | Pentatricopeptide repeat-containing protein At5g18475... | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0001522 | pseudouridine synthesis | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003697 | single-stranded DNA binding | IEP | Neighborhood |
| MF | GO:0003723 | RNA binding | IEP | Neighborhood |
| MF | GO:0003954 | NADH dehydrogenase activity | IEP | Neighborhood |
| MF | GO:0003993 | acid phosphatase activity | IEP | Neighborhood |
| MF | GO:0004000 | adenosine deaminase activity | IEP | Neighborhood |
| MF | GO:0004045 | aminoacyl-tRNA hydrolase activity | IEP | Neighborhood |
| MF | GO:0004427 | inorganic diphosphatase activity | IEP | Neighborhood |
| MF | GO:0005085 | guanyl-nucleotide exchange factor activity | IEP | Neighborhood |
| MF | GO:0005088 | Ras guanyl-nucleotide exchange factor activity | IEP | Neighborhood |
| MF | GO:0005089 | Rho guanyl-nucleotide exchange factor activity | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| MF | GO:0008137 | NADH dehydrogenase (ubiquinone) activity | IEP | Neighborhood |
| MF | GO:0008483 | transaminase activity | IEP | Neighborhood |
| BP | GO:0009451 | RNA modification | IEP | Neighborhood |
| MF | GO:0009982 | pseudouridine synthase activity | IEP | Neighborhood |
| CC | GO:0016272 | prefoldin complex | IEP | Neighborhood |
| MF | GO:0016462 | pyrophosphatase activity | IEP | Neighborhood |
| MF | GO:0016655 | oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | IEP | Neighborhood |
| MF | GO:0016708 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of two atoms of oxygen into one donor | IEP | Neighborhood |
| MF | GO:0016769 | transferase activity, transferring nitrogenous groups | IEP | Neighborhood |
| MF | GO:0016787 | hydrolase activity | IEP | Neighborhood |
| MF | GO:0016791 | phosphatase activity | IEP | Neighborhood |
| MF | GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | IEP | Neighborhood |
| MF | GO:0016814 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines | IEP | Neighborhood |
| MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | Neighborhood |
| MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Neighborhood |
| MF | GO:0016866 | intramolecular transferase activity | IEP | Neighborhood |
| MF | GO:0016887 | ATPase activity | IEP | Neighborhood |
| MF | GO:0017016 | Ras GTPase binding | IEP | Neighborhood |
| MF | GO:0017048 | Rho GTPase binding | IEP | Neighborhood |
| MF | GO:0019239 | deaminase activity | IEP | Neighborhood |
| MF | GO:0019899 | enzyme binding | IEP | Neighborhood |
| MF | GO:0031267 | small GTPase binding | IEP | Neighborhood |
| MF | GO:0050136 | NADH dehydrogenase (quinone) activity | IEP | Neighborhood |
| MF | GO:0051020 | GTPase binding | IEP | Neighborhood |
| MF | GO:0051082 | unfolded protein binding | IEP | Neighborhood |
| MF | GO:0051537 | 2 iron, 2 sulfur cluster binding | IEP | Neighborhood |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
| No external refs found! |