AMTR_s00066p00109320 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00066.97

Description : RNA biosynthesis.transcriptional activation.MADS box transcription factor

Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0010514 (LandPlants) Phylogenetic Tree(s): OG_05_0010514_tree ,
OG_06_0010116 (SeedPlants) Phylogenetic Tree(s): OG_06_0010116_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00066p00109320
Cluster	HCCA: Cluster_230

Target	Alias	Description	ECC score	Gene Family Method
AT1G24260	AGL9, SEP3	K-box region and MADS-box transcription factor family protein	0.02	Archaeplastida
AT1G69120	AGL7, AP1	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT3G02310	AGL4, SEP2	K-box region and MADS-box transcription factor family protein	0.02	Archaeplastida
AT5G60910	AGL8, FUL	AGAMOUS-like 8	0.04	Archaeplastida
GSVIVT01005934001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01008139001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
GSVIVT01008140001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01008806001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
GSVIVT01009815001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
GSVIVT01012110001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
GSVIVT01018450001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
Gb_16301	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os02g52340.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os03g54160.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os03g54170.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_13933g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_51624g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_758606g0010	No alias	MADS-box protein GGM13 OS=Gnetum gnemon...	0.02	Archaeplastida
Pp3c14_22180V3.1	No alias	AGAMOUS-like 104	0.02	Archaeplastida
Pp3c25_6940V3.1	No alias	AGAMOUS-like 62	0.02	Archaeplastida
Solyc06g059970.4.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Solyc08g067230.4.1	No alias	No annotation	0.03	Archaeplastida
Solyc11g010570.2.1	No alias	transcription factor (MADS/AGL)	0.06	Archaeplastida
Zm00001e003670_P002	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e036422_P002	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003779	actin binding	IEP	Neighborhood
MF	GO:0004672	protein kinase activity	IEP	Neighborhood
BP	GO:0006464	cellular protein modification process	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
BP	GO:0006793	phosphorus metabolic process	IEP	Neighborhood
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Neighborhood
MF	GO:0008092	cytoskeletal protein binding	IEP	Neighborhood
MF	GO:0016301	kinase activity	IEP	Neighborhood
BP	GO:0016310	phosphorylation	IEP	Neighborhood
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Neighborhood
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Neighborhood
MF	GO:0030674	protein binding, bridging	IEP	Neighborhood
BP	GO:0036211	protein modification process	IEP	Neighborhood
BP	GO:0043412	macromolecule modification	IEP	Neighborhood
BP	GO:0044267	cellular protein metabolic process	IEP	Neighborhood
MF	GO:0044877	protein-containing complex binding	IEP	Neighborhood
MF	GO:0051015	actin filament binding	IEP	Neighborhood
MF	GO:0060090	molecular adaptor activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	71	170
IPR002100	TF_MADSbox	9	59

External Links

No external refs found!

AMTR_s00066p00109320 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation