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  5. AMTR_s00068p00064720

AMTR_s00068p00064720 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00068.26

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS30 component


Gene families : OG0003752 (Archaeplastida) Phylogenetic Tree(s): OG0003752_tree ,
OG_05_0003387 (LandPlants) Phylogenetic Tree(s): OG_05_0003387_tree ,
OG_06_0004145 (SeedPlants) Phylogenetic Tree(s): OG_06_0004145_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00068p00064720
Cluster HCCA: Cluster_232

Target Alias Description ECC score Gene Family Method Actions
AT4G29390 No alias Ribosomal protein S30 family protein 0.03 Archaeplastida
AT5G56670 No alias Ribosomal protein S30 family protein 0.03 Archaeplastida
Cpa|evm.model.tig00001003.33 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 Archaeplastida
Cre16.g666301 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 Archaeplastida
Gb_23464 No alias component RPS30 of SSU proteome 0.03 Archaeplastida
LOC_Os02g56014.1 No alias component RPS30 of SSU proteome 0.04 Archaeplastida
MA_10432727g0010 No alias component RPS30 of SSU proteome 0.04 Archaeplastida
Mp2g24290.1 No alias component RPS30 of SSU proteome 0.03 Archaeplastida
Pp3c2_28870V3.1 No alias Ribosomal protein S30 family protein 0.03 Archaeplastida
Pp3c2_29010V3.1 No alias Ribosomal protein S30 family protein 0.04 Archaeplastida
Pp3c7_26650V3.1 No alias Ribosomal protein S30 family protein 0.02 Archaeplastida
Solyc08g076340.3.1 No alias component RPS30 of SSU proteome 0.09 Archaeplastida
Solyc12g008700.3.1 No alias component RPS30 of SSU proteome 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
CC GO:0005787 signal peptidase complex IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006465 signal peptide processing IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
CC GO:1905368 peptidase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR006846 Ribosomal_S30 3 60
No external refs found!