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  5. AMTR_s00069p00029190

AMTR_s00069p00029190 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00069.13

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS13 component


Gene families : OG0001993 (Archaeplastida) Phylogenetic Tree(s): OG0001993_tree ,
OG_05_0001936 (LandPlants) Phylogenetic Tree(s): OG_05_0001936_tree ,
OG_06_0002387 (SeedPlants) Phylogenetic Tree(s): OG_06_0002387_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00069p00029190
Cluster HCCA: Cluster_160

Target Alias Description ECC score Gene Family Method Actions
AT3G60770 No alias Ribosomal protein S13/S15 0.16 Archaeplastida
AT4G00100 ATRPS13A, RPS13,... ribosomal protein S13A 0.17 Archaeplastida
Cpa|evm.model.tig00000489.15 No alias 40S ribosomal protein S13 OS=Glycine max 0.02 Archaeplastida
Cre07.g331900 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.17 Archaeplastida
GSVIVT01018537001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 Archaeplastida
GSVIVT01027637001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.14 Archaeplastida
Gb_18181 No alias component RPS13 of SSU proteome 0.08 Archaeplastida
Gb_34582 No alias component RPS13 of SSU proteome 0.08 Archaeplastida
LOC_Os07g38540.1 No alias component RPS13 of SSU proteome 0.11 Archaeplastida
LOC_Os08g02400.1 No alias component RPS13 of SSU proteome 0.14 Archaeplastida
LOC_Os08g02410.1 No alias component RPS13 of SSU proteome 0.15 Archaeplastida
MA_141232g0010 No alias component RPS13 of SSU proteome 0.09 Archaeplastida
Mp4g03410.1 No alias component RPS13 of SSU proteome 0.18 Archaeplastida
Pp3c11_1100V3.1 No alias ribosomal protein S13A 0.16 Archaeplastida
Pp3c16_15220V3.1 No alias ribosomal protein S13A 0.12 Archaeplastida
Pp3c7_26720V3.1 No alias ribosomal protein S13A 0.14 Archaeplastida
Smo440805 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 Archaeplastida
Solyc01g091220.3.1 No alias component RPS13 of SSU proteome 0.13 Archaeplastida
Solyc03g083530.3.1 No alias component RPS13 of SSU proteome 0.1 Archaeplastida
Solyc05g051000.3.1 No alias component RPS13 of SSU proteome 0.05 Archaeplastida
Solyc10g018250.2.1 No alias component RPS13 of SSU proteome 0.09 Archaeplastida
Solyc11g072260.2.1 No alias component RPS13 of SSU proteome 0.12 Archaeplastida
Zm00001e021837_P003 No alias component RPS13 of SSU proteome 0.15 Archaeplastida
Zm00001e021839_P001 No alias component RPS13 of SSU proteome 0.16 Archaeplastida
Zm00001e029210_P002 No alias component RPS13 of SSU proteome 0.11 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Neighborhood
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0003954 NADH dehydrogenase activity IEP Neighborhood
MF GO:0004866 endopeptidase inhibitor activity IEP Neighborhood
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP Neighborhood
CC GO:0005739 mitochondrion IEP Neighborhood
CC GO:0005758 mitochondrial intermembrane space IEP Neighborhood
CC GO:0005787 signal peptidase complex IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006465 signal peptide processing IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006825 copper ion transport IEP Neighborhood
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
MF GO:0016530 metallochaperone activity IEP Neighborhood
MF GO:0016531 copper chaperone activity IEP Neighborhood
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
MF GO:0030414 peptidase inhibitor activity IEP Neighborhood
CC GO:0031970 organelle envelope lumen IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
MF GO:0061134 peptidase regulator activity IEP Neighborhood
MF GO:0061135 endopeptidase regulator activity IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0140104 molecular carrier activity IEP Neighborhood
CC GO:1905368 peptidase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000589 Ribosomal_S15 66 133
IPR012606 Ribosomal_S13/S15_N 1 60
No external refs found!