AMTR_s00069p00068180 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00069.41

Description : RNA biosynthesis.transcriptional activation.HSF (heat shock) transcription factor

Gene families : OG0000090 (Archaeplastida) Phylogenetic Tree(s): OG0000090_tree ,
OG_05_0000053 (LandPlants) Phylogenetic Tree(s): OG_05_0000053_tree ,
OG_06_0000104 (SeedPlants) Phylogenetic Tree(s): OG_06_0000104_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00069p00068180
Cluster	HCCA: Cluster_209

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00040p00209530	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.HSF (heat...	0.03	Archaeplastida
AT1G46264	HSFB4, SCZ, AT-HSFB4	heat shock transcription factor B4	0.02	Archaeplastida
AT1G77570	No alias	Winged helix-turn-helix transcription repressor DNA-binding	0.01	Archaeplastida
AT3G22830	AT-HSFA6B, HSFA6B	heat shock transcription factor A6B	0.03	Archaeplastida
GSVIVT01019829001	No alias	RNA biosynthesis.transcriptional activation.HSF (heat...	0.02	Archaeplastida
GSVIVT01020781001	No alias	RNA biosynthesis.transcriptional activation.HSF (heat...	0.03	Archaeplastida
GSVIVT01022134001	No alias	RNA biosynthesis.transcriptional activation.HSF (heat...	0.02	Archaeplastida
GSVIVT01033257001	No alias	RNA biosynthesis.transcriptional activation.HSF (heat...	0.03	Archaeplastida
Gb_11758	No alias	transcription factor (HSF). transcriptional regulator (HsfA1)	0.02	Archaeplastida
Gb_19891	No alias	transcription factor (HSF)	0.02	Archaeplastida
LOC_Os05g45410.1	No alias	transcription factor (HSF)	0.02	Archaeplastida
LOC_Os06g36930.1	No alias	transcription factor (HSF)	0.02	Archaeplastida
LOC_Os08g43334.1	No alias	transcription factor (HSF)	0.02	Archaeplastida
LOC_Os09g28200.1	No alias	transcription factor (HSF)	0.06	Archaeplastida
LOC_Os09g28354.1	No alias	transcription factor (HSF)	0.03	Archaeplastida
MA_110587g0010	No alias	transcription factor (HSF)	0.05	Archaeplastida
MA_5374g0010	No alias	transcription factor (HSF)	0.05	Archaeplastida
MA_8812600g0010	No alias	transcription factor (HSF)	0.03	Archaeplastida
Pp3c18_9360V3.1	No alias	heat shock transcription factor B4	0.02	Archaeplastida
Pp3c1_32480V3.1	No alias	heat shock factor 3	0.02	Archaeplastida
Pp3c7_4270V3.1	No alias	heat shock transcription factor B4	0.04	Archaeplastida
Solyc02g072000.3.1	No alias	transcription factor (HSF)	0.04	Archaeplastida
Solyc02g090820.3.1	No alias	transcription factor (HSF)	0.03	Archaeplastida
Solyc03g006000.3.1	No alias	transcription factor (HSF)	0.03	Archaeplastida
Solyc04g016000.3.1	No alias	transcription factor (HSF)	0.03	Archaeplastida
Solyc06g053960.3.1	No alias	transcription factor (HSF)	0.03	Archaeplastida
Solyc12g007070.2.1	No alias	transcription factor (HSF)	0.01	Archaeplastida
Zm00001e001765_P002	No alias	transcription factor (HSF)	0.02	Archaeplastida
Zm00001e009944_P001	No alias	transcription factor (HSF)	0.02	Archaeplastida
Zm00001e014583_P001	No alias	transcription factor (HSF)	0.02	Archaeplastida
Zm00001e035680_P002	No alias	transcription factor (HSF)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	Neighborhood
BP	GO:0000272	polysaccharide catabolic process	IEP	Neighborhood
MF	GO:0004601	peroxidase activity	IEP	Neighborhood
MF	GO:0004672	protein kinase activity	IEP	Neighborhood
BP	GO:0006464	cellular protein modification process	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
BP	GO:0006855	drug transmembrane transport	IEP	Neighborhood
BP	GO:0006887	exocytosis	IEP	Neighborhood
BP	GO:0006979	response to oxidative stress	IEP	Neighborhood
BP	GO:0008037	cell recognition	IEP	Neighborhood
MF	GO:0015238	drug transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015297	antiporter activity	IEP	Neighborhood
BP	GO:0015893	drug transport	IEP	Neighborhood
MF	GO:0016160	amylase activity	IEP	Neighborhood
MF	GO:0016161	beta-amylase activity	IEP	Neighborhood
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Neighborhood
MF	GO:0016758	transferase activity, transferring hexosyl groups	IEP	Neighborhood
BP	GO:0022414	reproductive process	IEP	Neighborhood
BP	GO:0032940	secretion by cell	IEP	Neighborhood
BP	GO:0036211	protein modification process	IEP	Neighborhood
BP	GO:0043412	macromolecule modification	IEP	Neighborhood
CC	GO:0044448	cell cortex part	IEP	Neighborhood
BP	GO:0046903	secretion	IEP	Neighborhood
BP	GO:0048544	recognition of pollen	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000232	HSF_DNA-bd	25	116

External Links

No external refs found!

AMTR_s00069p00068180 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation