AMTR_s00069p00091460

Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.HD-ZIP IV transcription factor

Gene families : OG0000182 (Archaeplastida) Phylogenetic Tree(s): OG0000182_tree ,
OG_05_0000064 (LandPlants) Phylogenetic Tree(s): OG_05_0000064_tree ,
OG_06_0001940 (SeedPlants) Phylogenetic Tree(s): OG_06_0001940_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00069p00091460
Cluster	HCCA: Cluster_115

Target	Alias	Description	ECC score	Gene Family Method
AT4G04890	PDF2	protodermal factor 2	0.02	Archaeplastida
AT4G25530	HDG6, FWA	FLOWERING WAGENINGEN	0.02	Archaeplastida
AT5G07260	No alias	START (StAR-related lipid-transfer) lipid-binding domain	0.02	Archaeplastida
GSVIVT01029396001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.03	Archaeplastida
Gb_16030	No alias	transcription factor (HD-ZIP IV)	0.03	Archaeplastida
LOC_Os02g45250.1	No alias	transcription factor (HD-ZIP IV)	0.02	Archaeplastida
LOC_Os09g35760.1	No alias	transcription factor (HD-ZIP IV)	0.06	Archaeplastida
MA_10426189g0030	No alias	transcription factor (HD-ZIP IV)	0.03	Archaeplastida
MA_10433688g0010	No alias	transcription factor (HD-ZIP IV)	0.03	Archaeplastida
MA_16767g0010	No alias	transcription factor (HD-ZIP IV)	0.03	Archaeplastida
MA_38472g0010	No alias	transcription factor (HD-ZIP IV)	0.03	Archaeplastida
MA_8859629g0010	No alias	transcription factor (HD-ZIP IV)	0.03	Archaeplastida
Mp7g09710.1	No alias	transcription factor (HD-ZIP IV)	0.02	Archaeplastida
Solyc01g091630.3.1	No alias	transcription factor (HD-ZIP IV)	0.05	Archaeplastida
Solyc03g098200.4.1	No alias	transcription factor (HD-ZIP IV)	0.03	Archaeplastida
Solyc03g120620.3.1	No alias	transcription factor (HD-ZIP IV)	0.03	Archaeplastida
Solyc10g006420.4.1	No alias	transcription factor (HD-ZIP IV)	0.03	Archaeplastida
Zm00001e006870_P004	No alias	transcription factor (HD-ZIP IV)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003725	double-stranded RNA binding	IEP	Neighborhood
MF	GO:0003954	NADH dehydrogenase activity	IEP	Neighborhood
MF	GO:0004180	carboxypeptidase activity	IEP	Neighborhood
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	Neighborhood
MF	GO:0005215	transporter activity	IEP	Neighborhood
BP	GO:0006810	transport	IEP	Neighborhood
MF	GO:0008137	NADH dehydrogenase (ubiquinone) activity	IEP	Neighborhood
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	Neighborhood
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	Neighborhood
MF	GO:0022857	transmembrane transporter activity	IEP	Neighborhood
MF	GO:0048038	quinone binding	IEP	Neighborhood
MF	GO:0050136	NADH dehydrogenase (quinone) activity	IEP	Neighborhood
BP	GO:0051179	localization	IEP	Neighborhood
BP	GO:0051234	establishment of localization	IEP	Neighborhood
MF	GO:0051539	4 iron, 4 sulfur cluster binding	IEP	Neighborhood
BP	GO:0055085	transmembrane transport	IEP	Neighborhood
MF	GO:0070008	serine-type exopeptidase activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002913	START_lipid-bd_dom	316	538
IPR001356	Homeobox_dom	117	172

External Links

No external refs found!

AMTR_s00069p00091460

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation