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  5. AMTR_s00069p00156070

AMTR_s00069p00156070 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00069.126

Description : RNA biosynthesis.transcriptional activation.C3H zinc finger transcription factor


Gene families : OG0001128 (Archaeplastida) Phylogenetic Tree(s): OG0001128_tree ,
OG_05_0002994 (LandPlants) Phylogenetic Tree(s): OG_05_0002994_tree ,
OG_06_0003862 (SeedPlants) Phylogenetic Tree(s): OG_06_0003862_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00069p00156070
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
Gb_34826 No alias C3H zinc finger transcription factor 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003840 obsolete gamma-glutamyltransferase activity IEP Neighborhood
MF GO:0004659 prenyltransferase activity IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006575 cellular modified amino acid metabolic process IEP Neighborhood
BP GO:0006749 glutathione metabolic process IEP Neighborhood
BP GO:0006790 sulfur compound metabolic process IEP Neighborhood
MF GO:0008318 protein prenyltransferase activity IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Neighborhood
BP GO:0018342 protein prenylation IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
BP GO:0097354 prenylation IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 349 380
IPR001680 WD40_repeat 259 293
IPR001680 WD40_repeat 137 172
IPR001680 WD40_repeat 298 332
IPR000571 Znf_CCCH 107 127
No external refs found!