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  5. AT1G54540

AT1G54540


Description : Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family


Gene families : OG0000075 (Archaeplastida) Phylogenetic Tree(s): OG0000075_tree ,
OG_05_0000224 (LandPlants) Phylogenetic Tree(s): OG_05_0000224_tree ,
OG_06_0000531 (SeedPlants) Phylogenetic Tree(s): OG_06_0000531_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G54540
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00271600 evm_27.TU.AmTr_v1... NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana 0.05 Archaeplastida
AMTR_s00003p00244400 evm_27.TU.AmTr_v1... NDR1/HIN1-like protein 6 OS=Arabidopsis thaliana 0.02 Archaeplastida
AMTR_s00010p00185810 evm_27.TU.AmTr_v1... NDR1/HIN1-like protein 13 OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00030p00214230 evm_27.TU.AmTr_v1... NDR1/HIN1-like protein 10 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00030p00215650 evm_27.TU.AmTr_v1... NDR1/HIN1-like protein 3 OS=Arabidopsis thaliana 0.02 Archaeplastida
AMTR_s00171p00061900 evm_27.TU.AmTr_v1... NDR1/HIN1-like protein 6 OS=Arabidopsis thaliana 0.04 Archaeplastida
AT1G08160 No alias Late embryogenesis abundant (LEA) hydroxyproline-rich... 0.06 Archaeplastida
AT1G17620 No alias Late embryogenesis abundant (LEA) hydroxyproline-rich... 0.05 Archaeplastida
AT3G11650 NHL2 NDR1/HIN1-like 2 0.03 Archaeplastida
AT3G44220 No alias Late embryogenesis abundant (LEA) hydroxyproline-rich... 0.05 Archaeplastida
AT5G22200 No alias Late embryogenesis abundant (LEA) hydroxyproline-rich... 0.05 Archaeplastida
AT5G22870 No alias Late embryogenesis abundant (LEA) hydroxyproline-rich... 0.07 Archaeplastida
GSVIVT01016858001 No alias No description available 0.03 Archaeplastida
GSVIVT01037448001 No alias NDR1/HIN1-like protein 13 OS=Arabidopsis thaliana 0.03 Archaeplastida
Gb_00037 No alias NDR1/HIN1-like protein 10 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Gb_01957 No alias NDR1/HIN1-like protein 6 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Gb_04457 No alias NDR1/HIN1-like protein 10 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Gb_26587 No alias NDR1/HIN1-like protein 10 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Gb_26588 No alias NDR1/HIN1-like protein 10 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Gb_26590 No alias NDR1/HIN1-like protein 10 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Gb_41030 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os01g39290.1 No alias no hits & (original description: none) 0.09 Archaeplastida
LOC_Os01g59680.1 No alias NDR1/HIN1-like protein 13 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os01g64450.1 No alias NDR1/HIN1-like protein 3 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os02g33550.1 No alias NDR1/HIN1-like protein 1 OS=Arabidopsis thaliana... 0.09 Archaeplastida
LOC_Os02g44670.1 No alias no hits & (original description: none) 0.05 Archaeplastida
LOC_Os04g33990.1 No alias NDR1/HIN1-like protein 1 OS=Arabidopsis thaliana... 0.07 Archaeplastida
LOC_Os04g58090.1 No alias NDR1/HIN1-like protein 6 OS=Arabidopsis thaliana... 0.07 Archaeplastida
LOC_Os04g58860.1 No alias NDR1/HIN1-like protein 1 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os05g11010.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os08g01220.1 No alias NDR1/HIN1-like protein 1 OS=Arabidopsis thaliana... 0.08 Archaeplastida
LOC_Os09g09460.1 No alias NDR1/HIN1-like protein 6 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os10g39970.1 No alias no hits & (original description: none) 0.05 Archaeplastida
LOC_Os11g05860.1 No alias NDR1/HIN1-like protein 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_100525g0010 No alias NDR1/HIN1-like protein 26 OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_10432342g0020 No alias NDR1/HIN1-like protein 3 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_180376g0010 No alias NDR1/HIN1-like protein 6 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_3652531g0010 No alias No annotation 0.02 Archaeplastida
MA_44394g0020 No alias NDR1/HIN1-like protein 6 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_467179g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_47856g0010 No alias NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_5350879g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_63890g0010 No alias NDR1/HIN1-like protein 6 OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_696598g0010 No alias NDR1/HIN1-like protein 26 OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_740280g0010 No alias NDR1/HIN1-like protein 6 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_83110g0010 No alias NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_86810g0010 No alias NDR1/HIN1-like protein 10 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_9985g0010 No alias NDR1/HIN1-like protein 26 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Mp6g19740.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp7g19340.1 No alias NDR1/HIN1-like protein 10 OS=Arabidopsis thaliana... 0.08 Archaeplastida
Pp3c10_5660V3.1 No alias Late embryogenesis abundant (LEA) hydroxyproline-rich... 0.03 Archaeplastida
Pp3c12_2240V3.1 No alias NDR1/HIN1-like 3 0.03 Archaeplastida
Pp3c13_23080V3.1 No alias Late embryogenesis abundant (LEA) hydroxyproline-rich... 0.02 Archaeplastida
Pp3c4_22140V3.1 No alias NDR1/HIN1-like 25 0.03 Archaeplastida
Solyc02g036480.1.1 No alias NDR1/HIN1-like protein 6 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc02g081450.2.1 No alias NDR1/HIN1-like protein 6 OS=Arabidopsis thaliana... 0.09 Archaeplastida
Solyc03g019920.1.1 No alias NDR1/HIN1-like protein 6 OS=Arabidopsis thaliana... 0.16 Archaeplastida
Solyc03g081230.1.1 No alias NDR1/HIN1-like protein 26 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc03g121620.1.1 No alias NDR1/HIN1-like protein 13 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc06g074040.2.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc11g066490.1.1 No alias Uncharacterized protein At1g08160 OS=Arabidopsis... 0.05 Archaeplastida
Solyc11g068890.2.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc11g069970.1.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e004504_P001 No alias NDR1/HIN1-like protein 6 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Zm00001e008171_P001 No alias NDR1/HIN1-like protein 1 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Zm00001e014749_P001 No alias NDR1/HIN1-like protein 1 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Zm00001e019498_P001 No alias NDR1/HIN1-like protein 13 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e024292_P003 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e025983_P001 No alias no hits & (original description: none) 0.07 Archaeplastida
Zm00001e027782_P001 No alias No annotation 0.02 Archaeplastida
Zm00001e028673_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e029112_P001 No alias NDR1/HIN1-like protein 1 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Zm00001e035148_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e039222_P001 No alias NDR1/HIN1-like protein 13 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e039408_P001 No alias NDR1/HIN1-like protein 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e040847_P001 No alias NDR1/HIN1-like protein 1 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Zm00001e041977_P001 No alias NDR1/HIN1-like protein 1 OS=Arabidopsis thaliana... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005575 cellular_component ND Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Neighborhood
BP GO:0001101 response to acid chemical IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
BP GO:0006820 anion transport IEP Neighborhood
BP GO:0006826 iron ion transport IEP Neighborhood
BP GO:0006869 lipid transport IEP Neighborhood
BP GO:0007154 cell communication IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
BP GO:0009267 cellular response to starvation IEP Neighborhood
BP GO:0009561 megagametogenesis IEP Neighborhood
BP GO:0009698 phenylpropanoid metabolic process IEP Neighborhood
BP GO:0009699 phenylpropanoid biosynthetic process IEP Neighborhood
BP GO:0009736 cytokinin-activated signaling pathway IEP Neighborhood
BP GO:0009806 lignan metabolic process IEP Neighborhood
BP GO:0009807 lignan biosynthetic process IEP Neighborhood
MF GO:0009927 histidine phosphotransfer kinase activity IEP Neighborhood
BP GO:0009991 response to extracellular stimulus IEP Neighborhood
BP GO:0010026 trichome differentiation IEP Neighborhood
BP GO:0010035 response to inorganic substance IEP Neighborhood
BP GO:0010106 cellular response to iron ion starvation IEP Neighborhood
BP GO:0010167 response to nitrate IEP Neighborhood
BP GO:0010345 suberin biosynthetic process IEP Neighborhood
BP GO:0015698 inorganic anion transport IEP Neighborhood
BP GO:0015706 nitrate transport IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0031225 anchored component of membrane IEP Neighborhood
BP GO:0031667 response to nutrient levels IEP Neighborhood
BP GO:0031668 cellular response to extracellular stimulus IEP Neighborhood
BP GO:0031669 cellular response to nutrient levels IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
BP GO:0042594 response to starvation IEP Neighborhood
BP GO:0042761 very long-chain fatty acid biosynthetic process IEP Neighborhood
MF GO:0043424 protein histidine kinase binding IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0044038 cell wall macromolecule biosynthetic process IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
BP GO:0044550 secondary metabolite biosynthetic process IEP Neighborhood
BP GO:0045489 pectin biosynthetic process IEP Neighborhood
MF GO:0050734 hydroxycinnamoyltransferase activity IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0052325 cell wall pectin biosynthetic process IEP Neighborhood
BP GO:0070589 cellular component macromolecule biosynthetic process IEP Neighborhood
BP GO:0070592 cell wall polysaccharide biosynthetic process IEP Neighborhood
BP GO:0071496 cellular response to external stimulus IEP Neighborhood
BP GO:0080036 regulation of cytokinin-activated signaling pathway IEP Neighborhood
BP GO:0080091 regulation of raffinose metabolic process IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1901698 response to nitrogen compound IEP Neighborhood
BP GO:1901700 response to oxygen-containing compound IEP Neighborhood
InterPro domains Description Start Stop
IPR004864 LEA_2 112 205
No external refs found!