AMTR_s00071p00198520 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00071.215

Description : Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana

Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0044070 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0038612 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00071p00198520
Cluster	HCCA: Cluster_45

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00266470	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
AT1G71692	XAL1, AGL12	AGAMOUS-like 12	0.03	Archaeplastida
AT2G42830	SHP2, AGL5	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT3G30260	AGL79	AGAMOUS-like 79	0.08	Archaeplastida
AT3G58780	AGL1, SHP1	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT4G09960	STK, AGL11	K-box region and MADS-box transcription factor family protein	0.02	Archaeplastida
AT4G11880	AGL14	AGAMOUS-like 14	0.07	Archaeplastida
AT4G18960	AG	K-box region and MADS-box transcription factor family protein	0.02	Archaeplastida
AT5G23260	AGL32, TT16, ABS	K-box region and MADS-box transcription factor family protein	0.02	Archaeplastida
GSVIVT01003858001	No alias	Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana	0.03	Archaeplastida
GSVIVT01003861001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01012110001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
GSVIVT01015649001	No alias	No description available	0.05	Archaeplastida
GSVIVT01026207001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01035477001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
Gb_03068	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Gb_30604	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Gb_38920	No alias	no hits & (original description: none)	0.03	Archaeplastida
Gb_38922	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os04g23910.1	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
LOC_Os06g01890.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os06g11970.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os06g22760.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os06g23980.1	No alias	MADS-box transcription factor 27 OS=Oryza sativa subsp....	0.03	Archaeplastida
MA_10432817g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_16629g0010	No alias	transcription factor (MADS/AGL)	0.06	Archaeplastida
MA_175522g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_5917g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_6042439g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_6279308g0010	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
MA_6544g0010	No alias	Floral homeotic protein AGAMOUS OS=Panax ginseng...	0.06	Archaeplastida
MA_951956g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_9841429g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Pp3c17_24040V3.1	No alias	AGAMOUS-like 66	0.02	Archaeplastida
Smo113962	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
Smo121275	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
Smo69980	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
Smo79393	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
Solyc02g084630.3.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Solyc02g091550.2.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc05g012020.4.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc06g069430.3.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc10g044965.1.1	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
Solyc10g080030.2.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc11g032100.2.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e018993_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e019057_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e029170_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e030187_P001	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
Zm00001e030373_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0016020	membrane	IEP	Neighborhood
MF	GO:0022804	active transmembrane transporter activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	12	95

External Links

No external refs found!

AMTR_s00071p00198520 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation