1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00072p00101130

AMTR_s00072p00101130 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00072.48

Description : RNA biosynthesis.transcriptional activation.JUMONJI transcription factor


Gene families : OG0000515 (Archaeplastida) Phylogenetic Tree(s): OG0000515_tree ,
OG_05_0000563 (LandPlants) Phylogenetic Tree(s): OG_05_0000563_tree ,
OG_06_0000492 (SeedPlants) Phylogenetic Tree(s): OG_06_0000492_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00072p00101130
Cluster HCCA: Cluster_190

Target Alias Description ECC score Gene Family Method Actions
MA_103030g0010 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.04 Archaeplastida
Pp3c14_6480V3.1 No alias Transcription factor jumonji (jmjC) domain-containing protein 0.03 Archaeplastida
Solyc02g082400.4.1 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.04 Archaeplastida
Solyc03g083240.4.1 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.02 Archaeplastida
Solyc04g049140.4.1 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.02 Archaeplastida
Zm00001e004958_P004 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.04 Archaeplastida
Zm00001e023535_P001 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.04 Archaeplastida
Zm00001e025393_P001 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006644 phospholipid metabolic process IEP Neighborhood
BP GO:0006650 glycerophospholipid metabolic process IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
BP GO:0032012 regulation of ARF protein signal transduction IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
BP GO:0046486 glycerolipid metabolic process IEP Neighborhood
BP GO:0046488 phosphatidylinositol metabolic process IEP Neighborhood
BP GO:0046578 regulation of Ras protein signal transduction IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
BP GO:1902531 regulation of intracellular signal transduction IEP Neighborhood
InterPro domains Description Start Stop
IPR003347 JmjC_dom 631 731
No external refs found!