AT1G55310 (SR33, At-SCL33, ATSCL33, SCL33)


Aliases : SR33, At-SCL33, ATSCL33, SCL33

Description : SC35-like splicing factor 33


Gene families : OG0001329 (Archaeplastida) Phylogenetic Tree(s): OG0001329_tree ,
OG_05_0001146 (LandPlants) Phylogenetic Tree(s): OG_05_0001146_tree ,
OG_06_0001172 (SeedPlants) Phylogenetic Tree(s): OG_06_0001172_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G55310
Cluster HCCA: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00068p00135100 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome-associated... 0.03 Archaeplastida
Cre13.g586916 No alias RNA processing.RNA splicing.spliceosome-associated... 0.02 Archaeplastida
GSVIVT01016562001 No alias RNA processing.RNA splicing.spliceosome-associated... 0.03 Archaeplastida
GSVIVT01025432001 No alias Serine/arginine-rich SC35-like splicing factor SCL30A... 0.04 Archaeplastida
LOC_Os02g15310.1 No alias SCL28/30/33 RNA splicing factor 0.03 Archaeplastida
LOC_Os07g43950.1 No alias SCL28/30/33 RNA splicing factor 0.03 Archaeplastida
Pp3c6_9110V3.1 No alias SC35-like splicing factor 30A 0.08 Archaeplastida
Zm00001e002967_P002 No alias SCL28/30/33 RNA splicing factor 0.04 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle RCA Interproscan
BP GO:0000398 mRNA splicing, via spliceosome IPI Interproscan
BP GO:0000398 mRNA splicing, via spliceosome RCA Interproscan
MF GO:0003723 RNA binding ISS Interproscan
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005730 nucleolus IDA Interproscan
CC GO:0005886 plasma membrane IDA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated RCA Interproscan
BP GO:0006396 RNA processing RCA Interproscan
BP GO:0008380 RNA splicing NAS Interproscan
CC GO:0016607 nuclear speck IDA Interproscan
BP GO:0030422 production of siRNA involved in RNA interference RCA Interproscan
CC GO:0035061 interchromatin granule IDA Interproscan
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA RCA Interproscan
MF GO:0042802 identical protein binding IPI Interproscan
BP GO:0043687 post-translational protein modification RCA Interproscan
BP GO:0045893 positive regulation of transcription, DNA-templated RCA Interproscan
Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003713 transcription coactivator activity IEP Neighborhood
MF GO:0003863 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity IEP Neighborhood
MF GO:0004798 thymidylate kinase activity IEP Neighborhood
CC GO:0005654 nucleoplasm IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
CC GO:0005744 TIM23 mitochondrial import inner membrane translocase complex IEP Neighborhood
CC GO:0005778 peroxisomal membrane IEP Neighborhood
CC GO:0005779 integral component of peroxisomal membrane IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0007005 mitochondrion organization IEP Neighborhood
BP GO:0007006 mitochondrial membrane organization IEP Neighborhood
BP GO:0007007 inner mitochondrial membrane organization IEP Neighborhood
BP GO:0008283 cell proliferation IEP Neighborhood
MF GO:0008320 protein transmembrane transporter activity IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009410 response to xenobiotic stimulus IEP Neighborhood
BP GO:0009648 photoperiodism IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010048 vernalization response IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
MF GO:0015205 nucleobase transmembrane transporter activity IEP Neighborhood
MF GO:0015391 nucleobase:cation symporter activity IEP Neighborhood
MF GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity IEP Neighborhood
BP GO:0016559 peroxisome fission IEP Neighborhood
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Neighborhood
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Neighborhood
CC GO:0019005 SCF ubiquitin ligase complex IEP Neighborhood
MF GO:0019205 nucleobase-containing compound kinase activity IEP Neighborhood
BP GO:0019439 aromatic compound catabolic process IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
MF GO:0022884 macromolecule transmembrane transporter activity IEP Neighborhood
CC GO:0031231 intrinsic component of peroxisomal membrane IEP Neighborhood
CC GO:0031300 intrinsic component of organelle membrane IEP Neighborhood
CC GO:0031301 integral component of organelle membrane IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
CC GO:0031903 microbody membrane IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
BP GO:0034655 nucleobase-containing compound catabolic process IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
BP GO:0044270 cellular nitrogen compound catabolic process IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
CC GO:0044438 microbody part IEP Neighborhood
CC GO:0044439 peroxisomal part IEP Neighborhood
BP GO:0045039 protein import into mitochondrial inner membrane IEP Neighborhood
BP GO:0046700 heterocycle catabolic process IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0048573 photoperiodism, flowering IEP Neighborhood
MF GO:0050145 nucleoside monophosphate kinase activity IEP Neighborhood
BP GO:0090151 establishment of protein localization to mitochondrial membrane IEP Neighborhood
BP GO:1901361 organic cyclic compound catabolic process IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
BP GO:1990542 mitochondrial transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 38 107
No external refs found!