AMTR_s00078p00085160 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00078.58

Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.HD-ZIP I/II transcription factor


Gene families : OG0000146 (Archaeplastida) Phylogenetic Tree(s): OG0000146_tree ,
OG_05_0000061 (LandPlants) Phylogenetic Tree(s): OG_05_0000061_tree ,
OG_06_0000101 (SeedPlants) Phylogenetic Tree(s): OG_06_0000101_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00078p00085160
Cluster HCCA: Cluster_213

Target Alias Description ECC score Gene Family Method Actions
AT3G01220 ATHB20, HB20 homeobox protein 20 0.02 Archaeplastida
AT5G66700 ATHB53, HB53, HB-8 homeobox 53 0.05 Archaeplastida
Gb_07209 No alias Homeobox-leucine zipper protein HAT7 OS=Arabidopsis... 0.04 Archaeplastida
MA_19453g0050 No alias Homeobox-leucine zipper protein HAT5 OS=Arabidopsis... 0.03 Archaeplastida
Pp3c17_18130V3.1 No alias homeobox 1 0.04 Archaeplastida
Pp3c6_2730V3.1 No alias Homeobox-leucine zipper protein family 0.02 Archaeplastida
Pp3c8_440V3.1 No alias homeobox 3 0.02 Archaeplastida
Zm00001e007381_P001 No alias transcription factor (HD-ZIP I/II) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0043565 sequence-specific DNA binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Neighborhood
MF GO:0003896 DNA primase activity IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Neighborhood
BP GO:0008219 cell death IEP Neighborhood
MF GO:0008897 holo-[acyl-carrier-protein] synthase activity IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001356 Homeobox_dom 70 123
IPR003106 Leu_zip_homeo 125 167
No external refs found!