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  5. AT1G55460

AT1G55460


Description : DNA/RNA-binding protein Kin17, conserved region


Gene families : OG0004142 (Archaeplastida) Phylogenetic Tree(s): OG0004142_tree ,
OG_05_0006952 (LandPlants) Phylogenetic Tree(s): OG_05_0006952_tree ,
OG_06_0009683 (SeedPlants) Phylogenetic Tree(s): OG_06_0009683_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G55460
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01008269001 No alias Nutrient uptake.copper uptake.regulation.KIN17 copper... 0.03 Archaeplastida
LOC_Os03g37330.1 No alias copper homeostasis co-regulator (KIN17) 0.08 Archaeplastida
MA_8631g0010 No alias copper homeostasis co-regulator (KIN17) 0.02 Archaeplastida
Solyc05g054500.1.1 No alias copper homeostasis co-regulator (KIN17) 0.03 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization RCA Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0001085 RNA polymerase II transcription factor binding IEP Neighborhood
MF GO:0001091 RNA polymerase II basal transcription factor binding IEP Neighborhood
MF GO:0001093 TFIIB-class transcription factor binding IEP Neighborhood
MF GO:0001098 basal transcription machinery binding IEP Neighborhood
MF GO:0001099 basal RNA polymerase II transcription machinery binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004004 ATP-dependent RNA helicase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004439 phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005829 cytosol IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0007088 regulation of mitotic nuclear division IEP Neighborhood
BP GO:0007093 mitotic cell cycle checkpoint IEP Neighborhood
BP GO:0007094 mitotic spindle assembly checkpoint IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Neighborhood
MF GO:0008186 RNA-dependent ATPase activity IEP Neighborhood
BP GO:0009870 defense response signaling pathway, resistance gene-dependent IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
MF GO:0010340 carboxyl-O-methyltransferase activity IEP Neighborhood
MF GO:0010341 gibberellin carboxyl-O-methyltransferase activity IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010948 negative regulation of cell cycle process IEP Neighborhood
BP GO:0010965 regulation of mitotic sister chromatid separation IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016783 sulfurtransferase activity IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP Neighborhood
MF GO:0031071 cysteine desulfurase activity IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0031577 spindle checkpoint IEP Neighborhood
CC GO:0031981 nuclear lumen IEP Neighborhood
BP GO:0033045 regulation of sister chromatid segregation IEP Neighborhood
BP GO:0033046 negative regulation of sister chromatid segregation IEP Neighborhood
BP GO:0033047 regulation of mitotic sister chromatid segregation IEP Neighborhood
BP GO:0033048 negative regulation of mitotic sister chromatid segregation IEP Neighborhood
MF GO:0034593 phosphatidylinositol bisphosphate phosphatase activity IEP Neighborhood
MF GO:0034595 phosphatidylinositol phosphate 5-phosphatase activity IEP Neighborhood
CC GO:0043076 megasporocyte nucleus IEP Neighborhood
CC GO:0043078 polar nucleus IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043405 regulation of MAP kinase activity IEP Neighborhood
BP GO:0043407 negative regulation of MAP kinase activity IEP Neighborhood
BP GO:0043408 regulation of MAPK cascade IEP Neighborhood
BP GO:0043409 negative regulation of MAPK cascade IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045839 negative regulation of mitotic nuclear division IEP Neighborhood
BP GO:0045841 negative regulation of mitotic metaphase/anaphase transition IEP Neighborhood
BP GO:0045930 negative regulation of mitotic cell cycle IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0051783 regulation of nuclear division IEP Neighborhood
BP GO:0051784 negative regulation of nuclear division IEP Neighborhood
BP GO:0051983 regulation of chromosome segregation IEP Neighborhood
BP GO:0051985 negative regulation of chromosome segregation IEP Neighborhood
MF GO:0052866 phosphatidylinositol phosphate phosphatase activity IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
MF GO:0070063 RNA polymerase binding IEP Neighborhood
BP GO:0071173 spindle assembly checkpoint IEP Neighborhood
BP GO:0071174 mitotic spindle checkpoint IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:0080113 regulation of seed growth IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0106019 phosphatidylinositol-4,5-bisphosphate phosphatase activity IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901988 negative regulation of cell cycle phase transition IEP Neighborhood
BP GO:1901991 negative regulation of mitotic cell cycle phase transition IEP Neighborhood
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP Neighborhood
BP GO:1902100 negative regulation of metaphase/anaphase transition of cell cycle IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:1905818 regulation of chromosome separation IEP Neighborhood
BP GO:1905819 negative regulation of chromosome separation IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2000816 negative regulation of mitotic sister chromatid separation IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
BP GO:2001251 negative regulation of chromosome organization IEP Neighborhood
InterPro domains Description Start Stop
IPR019447 DNA/RNA-bd_Kin17_cons_domain 52 177
No external refs found!