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  5. AMTR_s00082p00184630

AMTR_s00082p00184630 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00082.43

Description : RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor


Gene families : OG0000055 (Archaeplastida) Phylogenetic Tree(s): OG0000055_tree ,
OG_05_0000021 (LandPlants) Phylogenetic Tree(s): OG_05_0000021_tree ,
OG_06_0024684 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00082p00184630
Cluster HCCA: Cluster_94

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00165560 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
AMTR_s00079p00169240 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
AMTR_s00139p00027000 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AT3G53820 No alias C2H2 and C2HC zinc fingers superfamily protein 0.03 Archaeplastida
LOC_Os11g48000.1 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
MA_126188g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_57615g0010 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Pp3c2_32900V3.1 No alias C2H2 and C2HC zinc fingers superfamily protein 0.01 Archaeplastida
Zm00001e009853_P001 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Zm00001e009854_P001 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Zm00001e022212_P001 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Zm00001e025746_P001 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Zm00001e030783_P001 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Zm00001e036816_P001 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Neighborhood
MF GO:0008171 O-methyltransferase activity IEP Neighborhood
MF GO:0010333 terpene synthase activity IEP Neighborhood
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016835 carbon-oxygen lyase activity IEP Neighborhood
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!