1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00085p00032940

AMTR_s00085p00032940 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00085.9

Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.YABBY transcription factor


Gene families : OG0000890 (Archaeplastida) Phylogenetic Tree(s): OG0000890_tree ,
OG_05_0006725 (LandPlants) Phylogenetic Tree(s): OG_05_0006725_tree ,
OG_06_0004255 (SeedPlants) Phylogenetic Tree(s): OG_06_0004255_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00085p00032940
Cluster HCCA: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
AT1G23420 INO Plant-specific transcription factor YABBY family protein 0.07 Archaeplastida
AT2G45190 AFO, YAB1, FIL Plant-specific transcription factor YABBY family protein 0.1 Archaeplastida
AT4G00180 YAB3 Plant-specific transcription factor YABBY family protein 0.03 Archaeplastida
GSVIVT01012246001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.03 Archaeplastida
GSVIVT01013778001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.02 Archaeplastida
GSVIVT01015567001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.05 Archaeplastida
GSVIVT01027648001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.04 Archaeplastida
GSVIVT01037533001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.04 Archaeplastida
LOC_Os02g42950.1 No alias transcription factor (YABBY) 0.05 Archaeplastida
LOC_Os03g11600.1 No alias transcription factor (YABBY) 0.03 Archaeplastida
LOC_Os04g45330.1 No alias transcription factor (YABBY) 0.05 Archaeplastida
LOC_Os07g06620.2 No alias transcription factor (YABBY) 0.03 Archaeplastida
LOC_Os10g36420.1 No alias transcription factor (YABBY) 0.08 Archaeplastida
LOC_Os12g42610.1 No alias transcription factor (YABBY) 0.03 Archaeplastida
MA_10432332g0010 No alias transcription factor (YABBY) 0.04 Archaeplastida
MA_407206g0010 No alias transcription factor (YABBY) 0.02 Archaeplastida
Solyc01g010240.3.1 No alias transcription factor (YABBY) 0.06 Archaeplastida
Solyc01g091010.3.1 No alias transcription factor (YABBY) 0.03 Archaeplastida
Solyc05g012050.4.1 No alias transcription factor (YABBY) 0.03 Archaeplastida
Solyc08g079100.3.1 No alias transcription factor (YABBY) 0.04 Archaeplastida
Zm00001e000845_P005 No alias transcription factor (YABBY) 0.03 Archaeplastida
Zm00001e003268_P003 No alias transcription factor (YABBY) 0.04 Archaeplastida
Zm00001e004396_P001 No alias transcription factor (YABBY) 0.02 Archaeplastida
Zm00001e007412_P003 No alias transcription factor (YABBY) 0.02 Archaeplastida
Zm00001e012387_P001 No alias transcription factor (YABBY) 0.03 Archaeplastida
Zm00001e012388_P001 No alias transcription factor (YABBY) 0.02 Archaeplastida
Zm00001e015245_P002 No alias transcription factor (YABBY) 0.04 Archaeplastida
Zm00001e017951_P002 No alias transcription factor (YABBY) 0.04 Archaeplastida
Zm00001e032845_P002 No alias transcription factor (YABBY) 0.03 Archaeplastida
Zm00001e035310_P003 No alias transcription factor (YABBY) 0.03 Archaeplastida
Zm00001e041322_P001 No alias transcription factor (YABBY) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Neighborhood
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0033897 ribonuclease T2 activity IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
MF GO:0051087 chaperone binding IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR006780 YABBY 12 177
No external refs found!