AMTR_s00085p00165180 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00085.101

Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.KNOX transcription factor

Gene families : OG0000263 (Archaeplastida) Phylogenetic Tree(s): OG0000263_tree ,
OG_05_0000128 (LandPlants) Phylogenetic Tree(s): OG_05_0000128_tree ,
OG_06_0003089 (SeedPlants) Phylogenetic Tree(s): OG_06_0003089_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00085p00165180
Cluster	HCCA: Cluster_96

Target	Alias	Description	ECC score	Gene Family Method
AT1G62360	BUM1, SHL, STM,...	KNOX/ELK homeobox transcription factor	0.05	Archaeplastida
AT1G70510	KNAT2, ATK1	KNOTTED-like from Arabidopsis thaliana 2	0.03	Archaeplastida
AT4G08150	BP, BP1, KNAT1	KNOTTED-like from Arabidopsis thaliana	0.02	Archaeplastida
GSVIVT01004811001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.04	Archaeplastida
GSVIVT01007715001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.02	Archaeplastida
GSVIVT01009273001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.06	Archaeplastida
GSVIVT01013790001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.04	Archaeplastida
GSVIVT01018257001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.03	Archaeplastida
GSVIVT01030488001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.03	Archaeplastida
GSVIVT01031241001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.04	Archaeplastida
Gb_00572	No alias	transcription factor (KNOX)	0.03	Archaeplastida
Gb_00573	No alias	transcription factor (KNOX)	0.05	Archaeplastida
Gb_10887	No alias	transcription factor (KNOX)	0.02	Archaeplastida
LOC_Os01g19694.1	No alias	transcription factor (KNOX)	0.08	Archaeplastida
LOC_Os03g03164.2	No alias	transcription factor (KNOX)	0.04	Archaeplastida
LOC_Os03g47016.1	No alias	transcription factor (KNOX)	0.02	Archaeplastida
LOC_Os03g51690.2	No alias	transcription factor (KNOX)	0.08	Archaeplastida
LOC_Os03g51710.1	No alias	transcription factor (KNOX)	0.04	Archaeplastida
LOC_Os03g56140.1	No alias	transcription factor (KNOX)	0.02	Archaeplastida
LOC_Os05g03884.1	No alias	transcription factor (KNOX)	0.08	Archaeplastida
LOC_Os07g03770.1	No alias	transcription factor (KNOX)	0.04	Archaeplastida
Pp3c21_10320V3.1	No alias	KNOTTED-like from Arabidopsis thaliana 2	0.02	Archaeplastida
Pp3c6_1550V3.1	No alias	KNOTTED1-like homeobox gene 3	0.06	Archaeplastida
Smo159366	No alias	RNA biosynthesis.transcriptional activation.HB...	0.03	Archaeplastida
Solyc02g081120.4.1	No alias	transcription factor (KNOX)	0.04	Archaeplastida
Solyc04g077210.3.1	No alias	transcription factor (KNOX)	0.02	Archaeplastida
Solyc05g005090.4.1	No alias	transcription factor (KNOX)	0.07	Archaeplastida
Zm00001e005170_P001	No alias	transcription factor (KNOX)	0.03	Archaeplastida
Zm00001e005547_P001	No alias	transcription factor (KNOX)	0.02	Archaeplastida
Zm00001e011538_P001	No alias	transcription factor (KNOX)	0.05	Archaeplastida
Zm00001e012293_P001	No alias	transcription factor (KNOX)	0.03	Archaeplastida
Zm00001e012294_P001	No alias	no hits & (original description: none)	0.02	Archaeplastida
Zm00001e017489_P001	No alias	transcription factor (KNOX)	0.05	Archaeplastida
Zm00001e027562_P001	No alias	transcription factor (KNOX)	0.04	Archaeplastida
Zm00001e029453_P001	No alias	transcription factor (KNOX)	0.06	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0004672	protein kinase activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
BP	GO:0006464	cellular protein modification process	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
BP	GO:0006629	lipid metabolic process	IEP	Neighborhood
BP	GO:0006694	steroid biosynthetic process	IEP	Neighborhood
BP	GO:0008152	metabolic process	IEP	Neighborhood
BP	GO:0008202	steroid metabolic process	IEP	Neighborhood
BP	GO:0008610	lipid biosynthetic process	IEP	Neighborhood
MF	GO:0016278	lysine N-methyltransferase activity	IEP	Neighborhood
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	Neighborhood
BP	GO:0016569	covalent chromatin modification	IEP	Neighborhood
BP	GO:0016570	histone modification	IEP	Neighborhood
BP	GO:0016571	histone methylation	IEP	Neighborhood
MF	GO:0016706	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	IEP	Neighborhood
MF	GO:0016787	hydrolase activity	IEP	Neighborhood
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Neighborhood
BP	GO:0018022	peptidyl-lysine methylation	IEP	Neighborhood
MF	GO:0018024	histone-lysine N-methyltransferase activity	IEP	Neighborhood
BP	GO:0018193	peptidyl-amino acid modification	IEP	Neighborhood
BP	GO:0018205	peptidyl-lysine modification	IEP	Neighborhood
BP	GO:0034968	histone lysine methylation	IEP	Neighborhood
BP	GO:0036211	protein modification process	IEP	Neighborhood
MF	GO:0042054	histone methyltransferase activity	IEP	Neighborhood
MF	GO:0042393	histone binding	IEP	Neighborhood
BP	GO:0043412	macromolecule modification	IEP	Neighborhood
MF	GO:0043565	sequence-specific DNA binding	IEP	Neighborhood
BP	GO:0044238	primary metabolic process	IEP	Neighborhood
MF	GO:0046983	protein dimerization activity	IEP	Neighborhood
MF	GO:0051213	dioxygenase activity	IEP	Neighborhood
BP	GO:0071704	organic substance metabolic process	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR005539	ELK_dom	226	247
IPR005540	KNOX1	87	130
IPR005541	KNOX2	140	188
IPR008422	Homeobox_KN_domain	266	305

External Links

No external refs found!

AMTR_s00085p00165180 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation