AMTR_s00088p00128580 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00088.93

Description : DNA damage response.DNA repair mechanisms.base excision repair (BER).bifunctional DNA glycosylase/lyase (ROS1)

Gene families : OG0001102 (Archaeplastida) Phylogenetic Tree(s): OG0001102_tree ,
OG_05_0001721 (LandPlants) Phylogenetic Tree(s): OG_05_0001721_tree ,
OG_06_0001624 (SeedPlants) Phylogenetic Tree(s): OG_06_0001624_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00088p00128580
Cluster	HCCA: Cluster_204

Target	Alias	Description	ECC score	Gene Family Method
Pp3c4_2820V3.1	No alias	demeter-like 1	0.02	Archaeplastida
Solyc10g083630.2.1	No alias	methylcytosine-specific DNA glycosylase (ROS1)....	0.04	Archaeplastida
Zm00001e007900_P001	No alias	no hits & (original description: none)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006284	base-excision repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	IEP	Neighborhood
MF	GO:0003779	actin binding	IEP	Neighborhood
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0004592	pantoate-beta-alanine ligase activity	IEP	Neighborhood
MF	GO:0004665	prephenate dehydrogenase (NADP+) activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
BP	GO:0006570	tyrosine metabolic process	IEP	Neighborhood
BP	GO:0006571	tyrosine biosynthetic process	IEP	Neighborhood
BP	GO:0006766	vitamin metabolic process	IEP	Neighborhood
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	Neighborhood
MF	GO:0008092	cytoskeletal protein binding	IEP	Neighborhood
MF	GO:0008168	methyltransferase activity	IEP	Neighborhood
MF	GO:0008173	RNA methyltransferase activity	IEP	Neighborhood
MF	GO:0008236	serine-type peptidase activity	IEP	Neighborhood
BP	GO:0008277	regulation of G-protein coupled receptor protein signaling pathway	IEP	Neighborhood
MF	GO:0008373	sialyltransferase activity	IEP	Neighborhood
MF	GO:0008977	prephenate dehydrogenase (NAD+) activity	IEP	Neighborhood
BP	GO:0009072	aromatic amino acid family metabolic process	IEP	Neighborhood
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	Neighborhood
BP	GO:0009095	aromatic amino acid family biosynthetic process, prephenate pathway	IEP	Neighborhood
BP	GO:0009110	vitamin biosynthetic process	IEP	Neighborhood
BP	GO:0009966	regulation of signal transduction	IEP	Neighborhood
BP	GO:0009968	negative regulation of signal transduction	IEP	Neighborhood
BP	GO:0010646	regulation of cell communication	IEP	Neighborhood
BP	GO:0010648	negative regulation of cell communication	IEP	Neighborhood
BP	GO:0015939	pantothenate metabolic process	IEP	Neighborhood
BP	GO:0015940	pantothenate biosynthetic process	IEP	Neighborhood
BP	GO:0016053	organic acid biosynthetic process	IEP	Neighborhood
MF	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Neighborhood
MF	GO:0016779	nucleotidyltransferase activity	IEP	Neighborhood
MF	GO:0016787	hydrolase activity	IEP	Neighborhood
MF	GO:0017171	serine hydrolase activity	IEP	Neighborhood
BP	GO:0023021	termination of signal transduction	IEP	Neighborhood
BP	GO:0023051	regulation of signaling	IEP	Neighborhood
BP	GO:0023057	negative regulation of signaling	IEP	Neighborhood
MF	GO:0030674	protein binding, bridging	IEP	Neighborhood
BP	GO:0038032	termination of G-protein coupled receptor signaling pathway	IEP	Neighborhood
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	Neighborhood
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	Neighborhood
MF	GO:0043565	sequence-specific DNA binding	IEP	Neighborhood
MF	GO:0044877	protein-containing complex binding	IEP	Neighborhood
BP	GO:0045744	negative regulation of G-protein coupled receptor protein signaling pathway	IEP	Neighborhood
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	Neighborhood
BP	GO:0048519	negative regulation of biological process	IEP	Neighborhood
BP	GO:0048523	negative regulation of cellular process	IEP	Neighborhood
BP	GO:0048583	regulation of response to stimulus	IEP	Neighborhood
BP	GO:0048585	negative regulation of response to stimulus	IEP	Neighborhood
BP	GO:0050789	regulation of biological process	IEP	Neighborhood
BP	GO:0050794	regulation of cellular process	IEP	Neighborhood
MF	GO:0051015	actin filament binding	IEP	Neighborhood
MF	GO:0060090	molecular adaptor activity	IEP	Neighborhood
BP	GO:0065007	biological regulation	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003265	HhH-GPD_domain	1418	1537

External Links

No external refs found!

AMTR_s00088p00128580 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation