AMTR_s00088p00128580 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00088.93

Description : DNA damage response.DNA repair mechanisms.base excision repair (BER).bifunctional DNA glycosylase/lyase (ROS1)


Gene families : OG0001102 (Archaeplastida) Phylogenetic Tree(s): OG0001102_tree ,
OG_05_0001721 (LandPlants) Phylogenetic Tree(s): OG_05_0001721_tree ,
OG_06_0001624 (SeedPlants) Phylogenetic Tree(s): OG_06_0001624_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00088p00128580
Cluster HCCA: Cluster_204

Target Alias Description ECC score Gene Family Method Actions
Pp3c4_2820V3.1 No alias demeter-like 1 0.02 Archaeplastida
Solyc10g083630.2.1 No alias methylcytosine-specific DNA glycosylase (ROS1).... 0.04 Archaeplastida
Zm00001e007900_P001 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0006284 base-excision repair IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004592 pantoate-beta-alanine ligase activity IEP Neighborhood
MF GO:0004665 prephenate dehydrogenase (NADP+) activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006570 tyrosine metabolic process IEP Neighborhood
BP GO:0006571 tyrosine biosynthetic process IEP Neighborhood
BP GO:0006766 vitamin metabolic process IEP Neighborhood
BP GO:0006767 water-soluble vitamin metabolic process IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
BP GO:0008277 regulation of G-protein coupled receptor protein signaling pathway IEP Neighborhood
MF GO:0008373 sialyltransferase activity IEP Neighborhood
MF GO:0008977 prephenate dehydrogenase (NAD+) activity IEP Neighborhood
BP GO:0009072 aromatic amino acid family metabolic process IEP Neighborhood
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Neighborhood
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Neighborhood
BP GO:0009110 vitamin biosynthetic process IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0009968 negative regulation of signal transduction IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
BP GO:0010648 negative regulation of cell communication IEP Neighborhood
BP GO:0015939 pantothenate metabolic process IEP Neighborhood
BP GO:0015940 pantothenate biosynthetic process IEP Neighborhood
BP GO:0016053 organic acid biosynthetic process IEP Neighborhood
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
BP GO:0023021 termination of signal transduction IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
BP GO:0023057 negative regulation of signaling IEP Neighborhood
MF GO:0030674 protein binding, bridging IEP Neighborhood
BP GO:0038032 termination of G-protein coupled receptor signaling pathway IEP Neighborhood
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Neighborhood
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
BP GO:0045744 negative regulation of G-protein coupled receptor protein signaling pathway IEP Neighborhood
BP GO:0046394 carboxylic acid biosynthetic process IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0048523 negative regulation of cellular process IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
BP GO:0048585 negative regulation of response to stimulus IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
MF GO:0051015 actin filament binding IEP Neighborhood
MF GO:0060090 molecular adaptor activity IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
InterPro domains Description Start Stop
IPR003265 HhH-GPD_domain 1418 1537
No external refs found!