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  5. AMTR_s00088p00169250

AMTR_s00088p00169250 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00088.143

Description : FRIGIDA-like protein 3 OS=Arabidopsis thaliana


Gene families : OG0003683 (Archaeplastida) Phylogenetic Tree(s): OG0003683_tree ,
OG_05_0002554 (LandPlants) Phylogenetic Tree(s): OG_05_0002554_tree ,
OG_06_0001450 (SeedPlants) Phylogenetic Tree(s): OG_06_0001450_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00088p00169250
Cluster HCCA: Cluster_259

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01014065001 No alias Protein FRIGIDA OS=Arabidopsis thaliana 0.03 Archaeplastida
MA_10435809g0010 No alias FRIGIDA-like protein 3 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_83122g0010 No alias FRIGIDA-like protein 3 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Solyc03g117930.4.1 No alias Protein FRIGIDA OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e006376_P002 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000176 nuclear exosome (RNase complex) IEP Neighborhood
CC GO:0000178 exosome (RNase complex) IEP Neighborhood
BP GO:0001505 regulation of neurotransmitter levels IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004372 glycine hydroxymethyltransferase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006544 glycine metabolic process IEP Neighborhood
BP GO:0006563 L-serine metabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0009069 serine family amino acid metabolic process IEP Neighborhood
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Neighborhood
BP GO:0042133 neurotransmitter metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
CC GO:1905354 exoribonuclease complex IEP Neighborhood
InterPro domains Description Start Stop
IPR012474 Frigida 121 294
No external refs found!