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  5. AMTR_s00089p00070210

AMTR_s00089p00070210 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00089.28

Description : Pentatricopeptide repeat-containing protein At5g15280, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0010476 (Archaeplastida) Phylogenetic Tree(s): OG0010476_tree ,
OG_05_0010467 (LandPlants) Phylogenetic Tree(s): OG_05_0010467_tree ,
OG_06_0009400 (SeedPlants) Phylogenetic Tree(s): OG_06_0009400_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00089p00070210
Cluster HCCA: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
LOC_Os03g07220.1 No alias Pentatricopeptide repeat-containing protein At5g15280,... 0.04 Archaeplastida
Zm00001e000517_P002 No alias Pentatricopeptide repeat-containing protein At5g15280,... 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0004133 glycogen debranching enzyme activity IEP Neighborhood
MF GO:0004134 4-alpha-glucanotransferase activity IEP Neighborhood
MF GO:0004181 metallocarboxypeptidase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0004806 triglyceride lipase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
MF GO:0008235 metalloexopeptidase activity IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0009119 ribonucleoside metabolic process IEP Neighborhood
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Neighborhood
MF GO:0016298 lipase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042278 purine nucleoside metabolic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0043531 ADP binding IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046128 purine ribonucleoside metabolic process IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
CC GO:0071203 WASH complex IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
BP GO:1901068 guanosine-containing compound metabolic process IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:2001070 starch binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 952 999
IPR002885 Pentatricopeptide_repeat 1058 1103
IPR002885 Pentatricopeptide_repeat 396 441
IPR002885 Pentatricopeptide_repeat 193 218
IPR002885 Pentatricopeptide_repeat 743 771
IPR002885 Pentatricopeptide_repeat 1026 1053
IPR002885 Pentatricopeptide_repeat 154 183
IPR002885 Pentatricopeptide_repeat 568 593
IPR002885 Pentatricopeptide_repeat 813 841
IPR002885 Pentatricopeptide_repeat 676 701
IPR002885 Pentatricopeptide_repeat 1132 1157
No external refs found!