AMTR_s00090p00098500

Description : Photosystem II protein D1 OS=Nephroselmis olivacea

Gene families : OG0001158 (Archaeplastida) Phylogenetic Tree(s): OG0001158_tree ,
OG_05_0000799 (LandPlants) Phylogenetic Tree(s): OG_05_0000799_tree ,
OG_06_0000883 (SeedPlants) Phylogenetic Tree(s): OG_06_0000883_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00090p00098500
Cluster	HCCA: Cluster_199

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00172p00027480	No alias	Photosystem II protein D1 OS=Amborella trichopoda	0.03	Archaeplastida
AMTR_s00172p00030370	No alias	Photosystem II protein D1 OS=Amborella trichopoda	0.03	Archaeplastida
AMTR_s00172p00038240	No alias	Photosystem II protein D1 OS=Amborella trichopoda	0.03	Archaeplastida
AMTR_s00172p00040120	No alias	Photosystem II protein D1 OS=Amborella trichopoda	0.03	Archaeplastida
AMTR_s00390p00002060	No alias	Photosynthesis.photophosphorylation.photosystem II.PS-II...	0.03	Archaeplastida
ATCG00020	PSBA	photosystem II reaction center protein A	0.05	Archaeplastida
Gb_03955	No alias	Photosystem II protein D1 OS=Cryptomeria japonica...	0.05	Archaeplastida
Gb_09035	No alias	Photosystem II protein D1 OS=Cryptomeria japonica...	0.05	Archaeplastida
Gb_18604	No alias	Photosystem II protein D1 OS=Adiantum capillus-veneris...	0.05	Archaeplastida
Gb_20129	No alias	Photosystem II protein D1 OS=Zygnema circumcarinatum...	0.04	Archaeplastida
LOC_Os10g21192.1	No alias	component PsbA/D1 of PS-II reaction center complex	0.03	Archaeplastida
LOC_Os12g19580.1	No alias	Photosystem II protein D1 OS=Oryza sativa subsp. indica...	0.03	Archaeplastida
Smo139195	No alias	Photosystem II protein D1 OS=Phalaenopsis aphrodite...	0.03	Archaeplastida
Smo236852	No alias	Photosynthesis.photophosphorylation.photosystem II.PS-II...	0.04	Archaeplastida
Solyc00g277510.1.1	No alias	Photosystem II protein D1 OS=Phaseolus vulgaris...	0.02	Archaeplastida
Solyc00g500130.1.1	No alias	component PsbA/D1 of PS-II reaction center complex	0.06	Archaeplastida
Solyc00g500200.1.1	No alias	component PsbA/D1 of PS-II reaction center complex	0.06	Archaeplastida
Solyc00g500296.1.1	No alias	component PsbA/D1 of PS-II reaction center complex	0.06	Archaeplastida
Solyc00g500329.1.1	No alias	component PsbA/D1 of PS-II reaction center complex	0.06	Archaeplastida
Solyc05g016120.2.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e036844_P001	No alias	Photosystem II protein D1 OS=Zea mays...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0009055	electron transfer activity	None	Extended
BP	GO:0009767	photosynthetic electron transport chain	None	Extended
BP	GO:0009772	photosynthetic electron transport in photosystem II	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
BP	GO:0019684	photosynthesis, light reaction	IEA	Interproscan
BP	GO:0022900	electron transport chain	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
MF	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	IEA	Interproscan
BP	GO:0055114	oxidation-reduction process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003735	structural constituent of ribosome	IEP	Neighborhood
MF	GO:0003954	NADH dehydrogenase activity	IEP	Neighborhood
MF	GO:0005198	structural molecule activity	IEP	Neighborhood
CC	GO:0005840	ribosome	IEP	Neighborhood
BP	GO:0006412	translation	IEP	Neighborhood
BP	GO:0006518	peptide metabolic process	IEP	Neighborhood
MF	GO:0008137	NADH dehydrogenase (ubiquinone) activity	IEP	Neighborhood
BP	GO:0008535	respiratory chain complex IV assembly	IEP	Neighborhood
CC	GO:0009507	chloroplast	IEP	Neighborhood
CC	GO:0009536	plastid	IEP	Neighborhood
MF	GO:0015002	heme-copper terminal oxidase activity	IEP	Neighborhood
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	Neighborhood
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	Neighborhood
BP	GO:0017004	cytochrome complex assembly	IEP	Neighborhood
BP	GO:0022904	respiratory electron transport chain	IEP	Neighborhood
CC	GO:0031360	intrinsic component of thylakoid membrane	IEP	Neighborhood
CC	GO:0031361	integral component of thylakoid membrane	IEP	Neighborhood
BP	GO:0042773	ATP synthesis coupled electron transport	IEP	Neighborhood
BP	GO:0043043	peptide biosynthetic process	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043228	non-membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Neighborhood
BP	GO:0043603	cellular amide metabolic process	IEP	Neighborhood
BP	GO:0043604	amide biosynthetic process	IEP	Neighborhood
CC	GO:0044444	cytoplasmic part	IEP	Neighborhood
MF	GO:0048038	quinone binding	IEP	Neighborhood
MF	GO:0050136	NADH dehydrogenase (quinone) activity	IEP	Neighborhood
MF	GO:0051536	iron-sulfur cluster binding	IEP	Neighborhood
MF	GO:0051539	4 iron, 4 sulfur cluster binding	IEP	Neighborhood
MF	GO:0051540	metal cluster binding	IEP	Neighborhood
CC	GO:1990904	ribonucleoprotein complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000484	Photo_RC_L/M	72	174

External Links

No external refs found!

AMTR_s00090p00098500

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation