AT1G57560 (AtMYB50, MYB50)

Aliases : AtMYB50, MYB50

Description : myb domain protein 50

Gene families : OG0000002 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000002 (LandPlants) Phylogenetic Tree(s): OG_05_0000002_tree ,
OG_06_0000006 (SeedPlants) Phylogenetic Tree(s): OG_06_0000006_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G57560
Cluster	HCCA: Cluster_120

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00044p00189590	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MYB...	0.02	Archaeplastida
AT1G74080	ATMYB122, MYB122	myb domain protein 122	0.03	Archaeplastida
AT3G23250	ATMYB15, ATY19, MYB15	myb domain protein 15	0.03	Archaeplastida
AT4G17785	MYB39	myb domain protein 39	0.03	Archaeplastida
AT4G25560	AtMYB18, MYB18	myb domain protein 18	0.07	Archaeplastida
AT5G17800	MYB56, AtMYB56	myb domain protein 56	0.03	Archaeplastida
GSVIVT01003662001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.06	Archaeplastida
GSVIVT01027182001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.04	Archaeplastida
Gb_00379	No alias	transcription factor (MYB)	0.02	Archaeplastida
Gb_03227	No alias	transcription factor (MYB)	0.04	Archaeplastida
Gb_03994	No alias	transcription factor (MYB)	0.02	Archaeplastida
Gb_11232	No alias	transcription factor (MYB)	0.02	Archaeplastida
Gb_19348	No alias	transcription factor (MYB)	0.04	Archaeplastida
Gb_22239	No alias	transcription factor (MYB)	0.02	Archaeplastida
Gb_23187	No alias	transcription factor (MYB)	0.02	Archaeplastida
Gb_23598	No alias	no hits & (original description: none)	0.02	Archaeplastida
Gb_29789	No alias	transcription factor (MYB)	0.03	Archaeplastida
LOC_Os01g03720.1	No alias	transcription factor (MYB)	0.02	Archaeplastida
LOC_Os01g07450.1	No alias	transcription factor (MYB)	0.02	Archaeplastida
LOC_Os01g36460.1	No alias	transcription factor (MYB)	0.02	Archaeplastida
LOC_Os01g74590.1	No alias	transcription factor (MYB)	0.02	Archaeplastida
LOC_Os02g02370.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
LOC_Os02g36890.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
LOC_Os03g25550.1	No alias	transcription factor (MYB)	0.02	Archaeplastida
LOC_Os05g04210.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
LOC_Os07g31470.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
LOC_Os07g44090.3	No alias	transcription factor (MYB)	0.02	Archaeplastida
LOC_Os09g23620.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
LOC_Os10g33810.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
MA_136123g0010	No alias	transcription factor (MYB)	0.04	Archaeplastida
MA_137453g0010	No alias	transcription factor (MYB)	0.03	Archaeplastida
MA_21440g0010	No alias	transcription factor (MYB)	0.03	Archaeplastida
MA_53373g0010	No alias	transcription factor (MYB)	0.03	Archaeplastida
MA_66255g0010	No alias	transcription factor (MYB)	0.05	Archaeplastida
MA_7105735g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_81763g0010	No alias	transcription factor (MYB)	0.03	Archaeplastida
Mp8g11870.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
Pp3c1_42920V3.1	No alias	myb domain protein 103	0.03	Archaeplastida
Smo80553	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.04	Archaeplastida
Solyc01g102340.3.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
Solyc03g005570.3.1	No alias	transcription factor (MYB)	0.02	Archaeplastida
Solyc03g093890.3.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
Solyc03g093940.2.1	No alias	transcription factor (MYB)	0.04	Archaeplastida
Solyc09g008250.4.1	No alias	transcription factor (MYB)	0.04	Archaeplastida
Solyc10g081490.2.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
Zm00001e001492_P001	No alias	transcription factor (MYB)	0.04	Archaeplastida
Zm00001e016583_P001	No alias	transcription factor (MYB)	0.03	Archaeplastida
Zm00001e018471_P001	No alias	transcription factor (MYB)	0.04	Archaeplastida
Zm00001e020140_P001	No alias	transcription factor (MYB)	0.04	Archaeplastida
Zm00001e023733_P001	No alias	transcription factor (MYB)	0.03	Archaeplastida
Zm00001e027531_P001	No alias	transcription factor (MYB)	0.03	Archaeplastida
Zm00001e032347_P001	No alias	transcription factor (MYB)	0.03	Archaeplastida
Zm00001e033519_P001	No alias	transcription factor (MYB)	0.03	Archaeplastida
Zm00001e034072_P001	No alias	transcription factor (MYB)	0.03	Archaeplastida
Zm00001e037510_P001	No alias	transcription factor (MYB)	0.03	Archaeplastida
Zm00001e038356_P001	No alias	transcription factor (MYB)	0.03	Archaeplastida
Zm00001e041239_P001	No alias	transcription factor (MYB)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0001101	response to acid chemical	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	ISS	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006970	response to osmotic stress	None	Extended
BP	GO:0006972	hyperosmotic response	None	Extended
BP	GO:0007165	signal transduction	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009414	response to water deprivation	RCA	Interproscan
BP	GO:0009415	response to water	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009651	response to salt stress	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009723	response to ethylene	RCA	Interproscan
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009733	response to auxin	IEP	Interproscan
BP	GO:0009733	response to auxin	RCA	Interproscan
BP	GO:0009738	abscisic acid-activated signaling pathway	RCA	Interproscan
BP	GO:0009739	response to gibberellin	IEP	Interproscan
BP	GO:0009751	response to salicylic acid	IEP	Interproscan
BP	GO:0009753	response to jasmonic acid	IEP	Interproscan
BP	GO:0009753	response to jasmonic acid	RCA	Interproscan
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0014070	response to organic cyclic compound	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042493	response to drug	None	Extended
BP	GO:0042538	hyperosmotic salinity response	RCA	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046677	response to antibiotic	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0001505	regulation of neurotransmitter levels	IEP	Neighborhood
MF	GO:0001871	pattern binding	IEP	Neighborhood
BP	GO:0002376	immune system process	IEP	Neighborhood
BP	GO:0006544	glycine metabolic process	IEP	Neighborhood
BP	GO:0006546	glycine catabolic process	IEP	Neighborhood
BP	GO:0006636	unsaturated fatty acid biosynthetic process	IEP	Neighborhood
BP	GO:0006952	defense response	IEP	Neighborhood
BP	GO:0006955	immune response	IEP	Neighborhood
BP	GO:0009071	serine family amino acid catabolic process	IEP	Neighborhood
BP	GO:0009106	lipoate metabolic process	IEP	Neighborhood
BP	GO:0009605	response to external stimulus	IEP	Neighborhood
BP	GO:0009607	response to biotic stimulus	IEP	Neighborhood
BP	GO:0009617	response to bacterium	IEP	Neighborhood
BP	GO:0009620	response to fungus	IEP	Neighborhood
BP	GO:0009627	systemic acquired resistance	IEP	Neighborhood
BP	GO:0009696	salicylic acid metabolic process	IEP	Neighborhood
BP	GO:0009697	salicylic acid biosynthetic process	IEP	Neighborhood
BP	GO:0009814	defense response, incompatible interaction	IEP	Neighborhood
BP	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway	IEP	Neighborhood
BP	GO:0009863	salicylic acid mediated signaling pathway	IEP	Neighborhood
BP	GO:0010150	leaf senescence	IEP	Neighborhood
MF	GO:0010297	heteropolysaccharide binding	IEP	Neighborhood
MF	GO:0010309	acireductone dioxygenase [iron(II)-requiring] activity	IEP	Neighborhood
BP	GO:0010310	regulation of hydrogen peroxide metabolic process	IEP	Neighborhood
BP	GO:0010817	regulation of hormone levels	IEP	Neighborhood
MF	GO:0015238	drug transmembrane transporter activity	IEP	Neighborhood
BP	GO:0016053	organic acid biosynthetic process	IEP	Neighborhood
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	Neighborhood
MF	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	IEP	Neighborhood
BP	GO:0016999	antibiotic metabolic process	IEP	Neighborhood
BP	GO:0017000	antibiotic biosynthetic process	IEP	Neighborhood
BP	GO:0017144	drug metabolic process	IEP	Neighborhood
BP	GO:0018958	phenol-containing compound metabolic process	IEP	Neighborhood
MF	GO:0030247	polysaccharide binding	IEP	Neighborhood
BP	GO:0031347	regulation of defense response	IEP	Neighborhood
BP	GO:0031348	negative regulation of defense response	IEP	Neighborhood
BP	GO:0033559	unsaturated fatty acid metabolic process	IEP	Neighborhood
BP	GO:0042133	neurotransmitter metabolic process	IEP	Neighborhood
BP	GO:0042135	neurotransmitter catabolic process	IEP	Neighborhood
BP	GO:0042445	hormone metabolic process	IEP	Neighborhood
BP	GO:0042446	hormone biosynthetic process	IEP	Neighborhood
BP	GO:0042537	benzene-containing compound metabolic process	IEP	Neighborhood
BP	GO:0042742	defense response to bacterium	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
BP	GO:0043207	response to external biotic stimulus	IEP	Neighborhood
BP	GO:0045087	innate immune response	IEP	Neighborhood
BP	GO:0046189	phenol-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
BP	GO:0048585	negative regulation of response to stimulus	IEP	Neighborhood
BP	GO:0050832	defense response to fungus	IEP	Neighborhood
BP	GO:0051193	regulation of cofactor metabolic process	IEP	Neighborhood
BP	GO:0051704	multi-organism process	IEP	Neighborhood
BP	GO:0051707	response to other organism	IEP	Neighborhood
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	Neighborhood
BP	GO:0090693	plant organ senescence	IEP	Neighborhood
BP	GO:0098542	defense response to other organism	IEP	Neighborhood
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	Neighborhood
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	Neighborhood
BP	GO:2000377	regulation of reactive oxygen species metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001005	SANT/Myb	14	61
IPR001005	SANT/Myb	67	110

External Links

No external refs found!

AT1G57560 (AtMYB50, MYB50)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation