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  5. AMTR_s00096p00013400

AMTR_s00096p00013400 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00096.1

No description available


Gene families : OG0003216 (Archaeplastida) Phylogenetic Tree(s): OG0003216_tree ,
OG_05_0002186 (LandPlants) Phylogenetic Tree(s): OG_05_0002186_tree ,
OG_06_0001228 (SeedPlants) Phylogenetic Tree(s): OG_06_0001228_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00096p00013400
Cluster HCCA: Cluster_174

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00103420 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AMTR_s00053p00106730 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AMTR_s00067p00132270 evm_27.TU.AmTr_v1... No description available 0.05 Archaeplastida
AMTR_s00080p00161090 No alias No description available 0.03 Archaeplastida
AMTR_s00116p00137450 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AMTR_s00121p00085790 evm_27.TU.AmTr_v1... No description available 0.05 Archaeplastida
AMTR_s00130p00029500 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AMTR_s00134p00028350 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP Neighborhood
MF GO:0003725 double-stranded RNA binding IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
MF GO:0004806 triglyceride lipase activity IEP Neighborhood
CC GO:0005666 RNA polymerase III complex IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006383 transcription by RNA polymerase III IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
MF GO:0016298 lipase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
CC GO:0030880 RNA polymerase complex IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!