1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00096p00160080

AMTR_s00096p00160080 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00096.106

Description : RNA biosynthesis.transcriptional activation.bHLH transcription factor


Gene families : OG0000184 (Archaeplastida) Phylogenetic Tree(s): OG0000184_tree ,
OG_05_0001343 (LandPlants) Phylogenetic Tree(s): OG_05_0001343_tree ,
OG_06_0001632 (SeedPlants) Phylogenetic Tree(s): OG_06_0001632_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00096p00160080
Cluster HCCA: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
Pp3c2_16410V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity IEP Neighborhood
BP GO:0006188 IMP biosynthetic process IEP Neighborhood
MF GO:0008483 transaminase activity IEP Neighborhood
MF GO:0008762 UDP-N-acetylmuramate dehydrogenase activity IEP Neighborhood
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Neighborhood
MF GO:0016840 carbon-nitrogen lyase activity IEP Neighborhood
MF GO:0016842 amidine-lyase activity IEP Neighborhood
BP GO:0046040 IMP metabolic process IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
InterPro domains Description Start Stop
IPR011598 bHLH_dom 14 61
No external refs found!