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  5. AT1G58230

AT1G58230


Description : binding


Gene families : OG0003842 (Archaeplastida) Phylogenetic Tree(s): OG0003842_tree ,
OG_05_0003852 (LandPlants) Phylogenetic Tree(s): OG_05_0003852_tree ,
OG_06_0003548 (SeedPlants) Phylogenetic Tree(s): OG_06_0003548_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G58230
Cluster HCCA: Cluster_193

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01009194001 No alias BEACH domain-containing protein B OS=Arabidopsis thaliana 0.03 Archaeplastida
Gb_28819 No alias BEACH domain-containing protein B OS=Arabidopsis... 0.12 Archaeplastida
LOC_Os02g06720.1 No alias BEACH domain-containing protein B OS=Arabidopsis... 0.04 Archaeplastida
LOC_Os02g06725.1 No alias no hits & (original description: none) 0.07 Archaeplastida
LOC_Os06g46480.1 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_10434688g0010 No alias BEACH domain-containing protein B OS=Arabidopsis... 0.07 Archaeplastida
MA_955112g0010 No alias no hits & (original description: none) 0.07 Archaeplastida
Mp1g22060.1 No alias BEACH domain-containing protein B OS=Arabidopsis... 0.03 Archaeplastida
Pp3c20_23460V3.1 No alias binding 0.07 Archaeplastida
Smo107849 No alias BEACH domain-containing protein B OS=Arabidopsis thaliana 0.03 Archaeplastida
Solyc04g076500.4.1 No alias BEACH domain-containing protein B OS=Arabidopsis... 0.1 Archaeplastida
Solyc04g076510.3.1 No alias BEACH domain-containing protein B OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e025170_P001 No alias BEACH domain-containing protein B OS=Arabidopsis... 0.08 Archaeplastida
Zm00001e030316_P001 No alias BEACH domain-containing protein B OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e030321_P001 No alias BEACH domain-containing protein B OS=Arabidopsis... 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion IDA Interproscan
BP GO:0007165 signal transduction ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP Neighborhood
BP GO:0000911 cytokinesis by cell plate formation IEP Neighborhood
BP GO:0003006 developmental process involved in reproduction IEP Neighborhood
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005911 cell-cell junction IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006349 regulation of gene expression by genetic imprinting IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007275 multicellular organism development IEP Neighborhood
BP GO:0009292 genetic transfer IEP Neighborhood
BP GO:0009294 DNA mediated transformation IEP Neighborhood
CC GO:0009506 plasmodesma IEP Neighborhood
BP GO:0009606 tropism IEP Neighborhood
BP GO:0009629 response to gravity IEP Neighborhood
BP GO:0009630 gravitropism IEP Neighborhood
BP GO:0009639 response to red or far red light IEP Neighborhood
BP GO:0009640 photomorphogenesis IEP Neighborhood
BP GO:0009790 embryo development IEP Neighborhood
BP GO:0009791 post-embryonic development IEP Neighborhood
BP GO:0009793 embryo development ending in seed dormancy IEP Neighborhood
BP GO:0009880 embryonic pattern specification IEP Neighborhood
BP GO:0010014 meristem initiation IEP Neighborhood
BP GO:0010072 primary shoot apical meristem specification IEP Neighborhood
BP GO:0010091 trichome branching IEP Neighborhood
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP Neighborhood
BP GO:0010311 lateral root formation IEP Neighborhood
BP GO:0010431 seed maturation IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
MF GO:0015662 ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
BP GO:0016926 protein desumoylation IEP Neighborhood
BP GO:0016999 antibiotic metabolic process IEP Neighborhood
BP GO:0017000 antibiotic biosynthetic process IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
CC GO:0030054 cell junction IEP Neighborhood
BP GO:0032501 multicellular organismal process IEP Neighborhood
BP GO:0032506 cytokinetic process IEP Neighborhood
BP GO:0034508 centromere complex assembly IEP Neighborhood
BP GO:0042743 hydrogen peroxide metabolic process IEP Neighborhood
CC GO:0043076 megasporocyte nucleus IEP Neighborhood
CC GO:0043078 polar nucleus IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044764 multi-organism cellular process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0048281 inflorescence morphogenesis IEP Neighborhood
BP GO:0048283 indeterminate inflorescence morphogenesis IEP Neighborhood
BP GO:0048609 multicellular organismal reproductive process IEP Neighborhood
BP GO:0050665 hydrogen peroxide biosynthetic process IEP Neighborhood
BP GO:0051177 meiotic sister chromatid cohesion IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0071514 genetic imprinting IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0072593 reactive oxygen species metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0090421 embryonic meristem initiation IEP Neighborhood
BP GO:1902410 mitotic cytokinetic process IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
BP GO:1903409 reactive oxygen species biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR031570 DUF4704 698 970
IPR001680 WD40_repeat 2427 2460
IPR001680 WD40_repeat 2362 2398
IPR023362 PH-BEACH_dom 1772 1908
IPR000409 BEACH_dom 1950 2226
No external refs found!