1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00100p00127110

AMTR_s00100p00127110 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00100.45

No description available


Gene families : OG0000184 (Archaeplastida) Phylogenetic Tree(s): OG0000184_tree ,
OG_05_0000297 (LandPlants) Phylogenetic Tree(s): OG_05_0000297_tree ,
OG_06_0002202 (SeedPlants) Phylogenetic Tree(s): OG_06_0002202_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00100p00127110
Cluster HCCA: Cluster_115

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00100p00127040 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AMTR_s00102p00046460 evm_27.TU.AmTr_v1... Nutrient uptake.iron uptake.reduction-based strategy... 0.03 Archaeplastida
AT3G26744 ATICE1, ICE1, SCRM basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Archaeplastida
GSVIVT01008305001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
GSVIVT01008637001 No alias External stimuli response.temperature.ICE-CBF cold... 0.02 Archaeplastida
GSVIVT01009234001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.06 Archaeplastida
GSVIVT01013744001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
GSVIVT01013745001 No alias Transcription factor bHLH90 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01029311001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.02 Archaeplastida
Gb_26391 No alias transcription factor (bHLH) 0.03 Archaeplastida
Gb_36380 No alias transcription factor (bHLH) 0.04 Archaeplastida
LOC_Os04g23550.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
MA_28638g0010 No alias transcription factor (bHLH) 0.02 Archaeplastida
MA_336364g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_448849g0010 No alias transcription factor (bHLH). transcription factor (ICE1|2) 0.03 Archaeplastida
MA_63506g0010 No alias transcription factor (bHLH). transcription factor (ICE1|2) 0.02 Archaeplastida
Mp2g02460.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp4g04920.1 No alias transcription factor (bHLH). transcription factor (ICE1|2) 0.03 Archaeplastida
Mp8g06230.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
Pp3c1_20960V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Archaeplastida
Pp3c3_15850V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 Archaeplastida
Pp3c8_18070V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
Solyc05g014590.3.1 No alias transcription factor (bHLH) 0.06 Archaeplastida
Solyc06g051550.4.1 No alias transcription factor (bHLH). iron uptake transcription factor FIT 0.03 Archaeplastida
Solyc07g018010.3.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e008463_P008 No alias transcription factor (bHLH) 0.02 Archaeplastida
Zm00001e010525_P001 No alias transcription factor (bHLH) 0.02 Archaeplastida
Zm00001e040186_P002 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e040675_P003 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e040732_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!