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  5. AMTR_s00102p00105080

AMTR_s00102p00105080 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00102.58

Description : NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Coffea arabica


Gene families : OG0001688 (Archaeplastida) Phylogenetic Tree(s): OG0001688_tree ,
OG_05_0001178 (LandPlants) Phylogenetic Tree(s): OG_05_0001178_tree ,
OG_06_0000636 (SeedPlants) Phylogenetic Tree(s): OG_06_0000636_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00102p00105080
Cluster HCCA: Cluster_199

Target Alias Description ECC score Gene Family Method Actions
ATCG00890 NDHB.1 NADH-Ubiquinone/plastoquinone (complex I) protein 0.09 Archaeplastida
ATCG01250 NDHB.2 NADH-Ubiquinone/plastoquinone (complex I) protein 0.09 Archaeplastida
Gb_17281 No alias NAD(P)H-quinone oxidoreductase subunit 2 B,... 0.06 Archaeplastida
Gb_18608 No alias NAD(P)H-quinone oxidoreductase subunit 2 B,... 0.06 Archaeplastida
Gb_26291 No alias component NdhB of NDH membrane subcomplex M 0.06 Archaeplastida
LOC_Os07g25004.1 No alias component NdhB of NDH membrane subcomplex M 0.05 Archaeplastida
LOC_Os08g15248.1 No alias component NdhB of NDH membrane subcomplex M 0.05 Archaeplastida
Smo137726 No alias Photosynthesis.photophosphorylation.chlororespiration.NAD... 0.07 Archaeplastida
Solyc00g500146.1.1 No alias NAD(P)H-quinone oxidoreductase subunit 2 B,... 0.09 Archaeplastida
Solyc01g017170.1.1 No alias NAD(P)H-quinone oxidoreductase subunit 2 A,... 0.03 Archaeplastida
Solyc03g122010.1.1 No alias NAD(P)H-quinone oxidoreductase subunit 2 B,... 0.07 Archaeplastida
Solyc06g009580.1.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc09g050069.1.1 No alias NAD(P)H-quinone oxidoreductase subunit 2 A,... 0.06 Archaeplastida
Solyc09g050070.1.1 No alias NAD(P)H-quinone oxidoreductase subunit 2 A,... 0.06 Archaeplastida
Solyc10g061887.1.1 No alias component NdhB of NDH membrane subcomplex M 0.06 Archaeplastida
Solyc11g021090.3.1 No alias NAD(P)H-quinone oxidoreductase subunit 2 B,... 0.08 Archaeplastida
Solyc12g033020.1.1 No alias NAD(P)H-quinone oxidoreductase subunit 2 B,... 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEA Interproscan
BP GO:0042773 ATP synthesis coupled electron transport IEA Interproscan
BP GO:0055114 oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0008535 respiratory chain complex IV assembly IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009141 nucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
BP GO:0009767 photosynthetic electron transport chain IEP Neighborhood
BP GO:0009772 photosynthetic electron transport in photosystem II IEP Neighborhood
BP GO:0017004 cytochrome complex assembly IEP Neighborhood
BP GO:0019684 photosynthesis, light reaction IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP Neighborhood
BP GO:0046034 ATP metabolic process IEP Neighborhood
MF GO:0048038 quinone binding IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001750 ND/Mrp_mem 24 158
No external refs found!