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  5. AMTR_s00102p00107760

AMTR_s00102p00107760 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00102.60

Description : Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex A.NdhK component


Gene families : OG0003878 (Archaeplastida) Phylogenetic Tree(s): OG0003878_tree ,
OG_05_0002828 (LandPlants) Phylogenetic Tree(s): OG_05_0002828_tree ,
OG_06_0003618 (SeedPlants) Phylogenetic Tree(s): OG_06_0003618_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00102p00107760
Cluster HCCA: Cluster_199

Target Alias Description ECC score Gene Family Method Actions
ATCG00430 PSBG photosystem II reaction center protein G 0.05 Archaeplastida
Gb_14100 No alias NAD(P)H-quinone oxidoreductase subunit K, chloroplastic... 0.04 Archaeplastida
Gb_18611 No alias component NdhK of NDH subcomplex A 0.04 Archaeplastida
Gb_28626 No alias component NdhK of NDH subcomplex A 0.04 Archaeplastida
LOC_Os01g58022.1 No alias component NdhK of NDH subcomplex A 0.05 Archaeplastida
Smo4549 No alias Photosynthesis.photophosphorylation.chlororespiration.NAD... 0.09 Archaeplastida
Smo4550 No alias Photosynthesis.photophosphorylation.chlororespiration.NAD... 0.09 Archaeplastida
Solyc00g500062.1.1 No alias component NdhK of NDH subcomplex A 0.11 Archaeplastida
Solyc00g500141.1.1 No alias NAD(P)H-quinone oxidoreductase subunit K, chloroplastic... 0.04 Archaeplastida
Zm00001e017818_P001 No alias No annotation 0.03 Archaeplastida
Zm00001e042032_P001 No alias component NdhK of NDH subcomplex A 0.04 Archaeplastida
Zm00001e042079_P001 No alias component NdhK of NDH subcomplex A 0.04 Archaeplastida
Zm00001e042097_P001 No alias component NdhK of NDH subcomplex A 0.04 Archaeplastida
Zm00001e042149_P001 No alias component NdhK of NDH subcomplex A 0.04 Archaeplastida
Zm00001e042352_P001 No alias component NdhK of NDH subcomplex A 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEA Interproscan
MF GO:0048038 quinone binding IEA Interproscan
MF GO:0051539 4 iron, 4 sulfur cluster binding IEA Interproscan
BP GO:0055114 oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0006091 generation of precursor metabolites and energy IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
BP GO:0009767 photosynthetic electron transport chain IEP Neighborhood
BP GO:0009772 photosynthetic electron transport in photosystem II IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0019684 photosynthesis, light reaction IEP Neighborhood
BP GO:0022900 electron transport chain IEP Neighborhood
BP GO:0022904 respiratory electron transport chain IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0042773 ATP synthesis coupled electron transport IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR006137 NADH_UbQ_OxRdtase-like_20kDa 129 203
IPR000440 NADH_UbQ/plastoQ_OxRdtase_su3 2 35
No external refs found!