AT1G59500 (GH3.4)

Aliases : GH3.4

Description : Auxin-responsive GH3 family protein

Gene families : OG0000138 (Archaeplastida) Phylogenetic Tree(s): OG0000138_tree ,
OG_05_0000189 (LandPlants) Phylogenetic Tree(s): OG_05_0000189_tree ,
OG_06_0000290 (SeedPlants) Phylogenetic Tree(s): OG_06_0000290_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G59500
Cluster	HCCA: Cluster_108

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00258580	evm_27.TU.AmTr_v1...	Indole-3-acetic acid-amido synthetase GH3.10...	0.03	Archaeplastida
AT1G48660	No alias	Auxin-responsive GH3 family protein	0.04	Archaeplastida
AT5G51470	No alias	Auxin-responsive GH3 family protein	0.06	Archaeplastida
GSVIVT01027971001	No alias	Putative indole-3-acetic acid-amido synthetase GH3.9...	0.05	Archaeplastida
Gb_14666	No alias	no description available(sp\|a0a314ksq4\|jar6_nicat : 461.0)	0.02	Archaeplastida
Gb_14667	No alias	jasmonoyl-amino acid synthetase (JAR1)	0.03	Archaeplastida
Gb_31649	No alias	Indole-3-acetic acid-amido synthetase GH3.5...	0.03	Archaeplastida
Gb_41415	No alias	indole-3-acetic acid-amido synthetase	0.02	Archaeplastida
LOC_Os05g42150.1	No alias	indole-3-acetic acid-amido synthetase	0.01	Archaeplastida
LOC_Os11g08340.1	No alias	Probable indole-3-acetic acid-amido synthetase GH3.12...	0.03	Archaeplastida
LOC_Os11g32510.1	No alias	Indole-3-acetic acid-amido synthetase GH3.17...	0.02	Archaeplastida
MA_100975g0010	No alias	Indole-3-acetic acid-amido synthetase GH3.6...	0.03	Archaeplastida
MA_10434772g0010	No alias	indole-3-acetic acid-amido synthetase	0.02	Archaeplastida
MA_212507g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
Smo110439	No alias	Indole-3-acetic acid-amido synthetase GH3.10...	0.03	Archaeplastida
Smo125443	No alias	Indole-3-acetic acid-amido synthetase GH3.10...	0.03	Archaeplastida
Smo416246	No alias	Jasmonic acid-amido synthetase JAR1 OS=Oryza sativa...	0.02	Archaeplastida
Solyc00g500218.1.1	No alias	jasmonoyl-amino acid synthetase (JAR1)	0.03	Archaeplastida
Solyc06g048710.2.1	No alias	jasmonoyl-amino acid synthetase (JAR1)	0.04	Archaeplastida
Solyc07g054580.3.1	No alias	Indole-3-acetic acid-amido synthetase GH3.10...	0.01	Archaeplastida
Solyc10g006610.4.1	No alias	Indole-3-acetic acid-amido synthetase GH3.6...	0.03	Archaeplastida
Solyc10g009610.2.1	No alias	jasmonoyl-amino acid synthetase (JAR1)	0.03	Archaeplastida
Zm00001e016438_P001	No alias	jasmonoyl-amino acid synthetase (JAR1)	0.03	Archaeplastida
Zm00001e016439_P001	No alias	No annotation	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009733	response to auxin	ISS	Interproscan
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010252	auxin homeostasis	TAS	Interproscan
MF	GO:0010279	indole-3-acetic acid amido synthetase activity	IDA	Interproscan
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	None	Extended
MF	GO:0016881	acid-amino acid ligase activity	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042592	homeostatic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0048878	chemical homeostasis	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
MF	GO:0003848	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity	IEP	Neighborhood
MF	GO:0004029	aldehyde dehydrogenase (NAD) activity	IEP	Neighborhood
MF	GO:0004031	aldehyde oxidase activity	IEP	Neighborhood
MF	GO:0004156	dihydropteroate synthase activity	IEP	Neighborhood
MF	GO:0004175	endopeptidase activity	IEP	Neighborhood
MF	GO:0004252	serine-type endopeptidase activity	IEP	Neighborhood
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Neighborhood
MF	GO:0004564	beta-fructofuranosidase activity	IEP	Neighborhood
MF	GO:0004650	polygalacturonase activity	IEP	Neighborhood
MF	GO:0005355	glucose transmembrane transporter activity	IEP	Neighborhood
CC	GO:0005576	extracellular region	IEP	Neighborhood
BP	GO:0006349	regulation of gene expression by genetic imprinting	IEP	Neighborhood
MF	GO:0008233	peptidase activity	IEP	Neighborhood
MF	GO:0008236	serine-type peptidase activity	IEP	Neighborhood
BP	GO:0009396	folic acid-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0009685	gibberellin metabolic process	IEP	Neighborhood
BP	GO:0009686	gibberellin biosynthetic process	IEP	Neighborhood
BP	GO:0009888	tissue development	IEP	Neighborhood
BP	GO:0009960	endosperm development	IEP	Neighborhood
BP	GO:0009996	negative regulation of cell fate specification	IEP	Neighborhood
BP	GO:0010023	proanthocyanidin biosynthetic process	IEP	Neighborhood
BP	GO:0010051	xylem and phloem pattern formation	IEP	Neighborhood
BP	GO:0010061	regulation of trichoblast fate specification	IEP	Neighborhood
BP	GO:0010062	negative regulation of trichoblast fate specification	IEP	Neighborhood
BP	GO:0010453	regulation of cell fate commitment	IEP	Neighborhood
BP	GO:0010454	negative regulation of cell fate commitment	IEP	Neighborhood
MF	GO:0015145	monosaccharide transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015149	hexose transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015152	glucose-6-phosphate transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015712	hexose phosphate transport	IEP	Neighborhood
BP	GO:0016101	diterpenoid metabolic process	IEP	Neighborhood
BP	GO:0016102	diterpenoid biosynthetic process	IEP	Neighborhood
MF	GO:0016623	oxidoreductase activity, acting on the aldehyde or oxo group of donors, oxygen as acceptor	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
MF	GO:0016706	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	IEP	Neighborhood
MF	GO:0016707	gibberellin 3-beta-dioxygenase activity	IEP	Neighborhood
MF	GO:0016778	diphosphotransferase activity	IEP	Neighborhood
MF	GO:0016787	hydrolase activity	IEP	Neighborhood
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Neighborhood
MF	GO:0017171	serine hydrolase activity	IEP	Neighborhood
MF	GO:0018479	benzaldehyde dehydrogenase (NAD+) activity	IEP	Neighborhood
MF	GO:0018488	aryl-aldehyde oxidase activity	IEP	Neighborhood
BP	GO:0030656	regulation of vitamin metabolic process	IEP	Neighborhood
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0042659	regulation of cell fate specification	IEP	Neighborhood
CC	GO:0043076	megasporocyte nucleus	IEP	Neighborhood
CC	GO:0043078	polar nucleus	IEP	Neighborhood
MF	GO:0045544	gibberellin 20-oxidase activity	IEP	Neighborhood
BP	GO:0045596	negative regulation of cell differentiation	IEP	Neighborhood
BP	GO:0045912	negative regulation of carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0046137	negative regulation of vitamin metabolic process	IEP	Neighborhood
BP	GO:0046653	tetrahydrofolate metabolic process	IEP	Neighborhood
BP	GO:0046654	tetrahydrofolate biosynthetic process	IEP	Neighborhood
BP	GO:0046688	response to copper ion	IEP	Neighborhood
BP	GO:0048317	seed morphogenesis	IEP	Neighborhood
MF	GO:0050362	L-tryptophan:2-oxoglutarate aminotransferase activity	IEP	Neighborhood
BP	GO:0051195	negative regulation of cofactor metabolic process	IEP	Neighborhood
BP	GO:0051196	regulation of coenzyme metabolic process	IEP	Neighborhood
BP	GO:0051198	negative regulation of coenzyme metabolic process	IEP	Neighborhood
MF	GO:0051213	dioxygenase activity	IEP	Neighborhood
BP	GO:0062014	negative regulation of small molecule metabolic process	IEP	Neighborhood
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	IEP	Neighborhood
MF	GO:0070529	L-tryptophan aminotransferase activity	IEP	Neighborhood
BP	GO:0071514	genetic imprinting	IEP	Neighborhood
BP	GO:0080050	regulation of seed development	IEP	Neighborhood
MF	GO:0080097	L-tryptophan:pyruvate aminotransferase activity	IEP	Neighborhood
BP	GO:0080113	regulation of seed growth	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood
BP	GO:1903888	regulation of plant epidermal cell differentiation	IEP	Neighborhood
BP	GO:1903889	negative regulation of plant epidermal cell differentiation	IEP	Neighborhood
BP	GO:1905421	regulation of plant organ morphogenesis	IEP	Neighborhood
BP	GO:1905422	negative regulation of plant organ morphogenesis	IEP	Neighborhood
BP	GO:2000014	regulation of endosperm development	IEP	Neighborhood
BP	GO:2000067	regulation of root morphogenesis	IEP	Neighborhood
BP	GO:2000082	regulation of L-ascorbic acid biosynthetic process	IEP	Neighborhood
BP	GO:2000083	negative regulation of L-ascorbic acid biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR004993	GH3	27	567

External Links

No external refs found!

AT1G59500 (GH3.4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation