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  5. AMTR_s00107p00149370

AMTR_s00107p00149370 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00107.44

Description : Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0000289 (Archaeplastida) Phylogenetic Tree(s): OG0000289_tree ,
OG_05_0017338 (LandPlants) Phylogenetic Tree(s): OG_05_0017338_tree ,
OG_06_0015098 (SeedPlants) Phylogenetic Tree(s): OG_06_0015098_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00107p00149370
Cluster HCCA: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
AT1G64590 No alias NAD(P)-binding Rossmann-fold superfamily protein 0.04 Archaeplastida
AT4G11410 No alias NAD(P)-binding Rossmann-fold superfamily protein 0.02 Archaeplastida
Cpa|evm.model.tig00000204.28 No alias Short-chain dehydrogenase TIC 32, chloroplastic... 0.01 Archaeplastida
Cre09.g398252 No alias Short-chain dehydrogenase TIC 32, chloroplastic... 0.04 Archaeplastida
GSVIVT01007686001 No alias Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum 0.03 Archaeplastida
GSVIVT01028899001 No alias Protein translocation.chloroplast.inner envelope TIC... 0.03 Archaeplastida
GSVIVT01028900001 No alias Protein translocation.chloroplast.inner envelope TIC... 0.03 Archaeplastida
Smo96850 No alias Short-chain dehydrogenase TIC 32, chloroplastic... 0.04 Archaeplastida
Solyc08g082870.3.1 No alias Short-chain dehydrogenase TIC 32, chloroplastic... 0.03 Archaeplastida
Zm00001e002280_P001 No alias Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum... 0.03 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0008152 metabolic process IEA Interproscan
MF GO:0016491 oxidoreductase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0004827 proline-tRNA ligase activity IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006433 prolyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006536 glutamate metabolic process IEP Neighborhood
BP GO:0006537 glutamate biosynthetic process IEP Neighborhood
BP GO:0008652 cellular amino acid biosynthetic process IEP Neighborhood
BP GO:0009064 glutamine family amino acid metabolic process IEP Neighborhood
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
MF GO:0015930 glutamate synthase activity IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016854 racemase and epimerase activity IEP Neighborhood
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
BP GO:0017004 cytochrome complex assembly IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
BP GO:0043648 dicarboxylic acid metabolic process IEP Neighborhood
BP GO:0043650 dicarboxylic acid biosynthetic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:1901607 alpha-amino acid biosynthetic process IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!