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  5. AMTR_s00108p00058320

AMTR_s00108p00058320 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00108.6

Description : Tetraspanin-6 OS=Arabidopsis thaliana


Gene families : OG0000259 (Archaeplastida) Phylogenetic Tree(s): OG0000259_tree ,
OG_05_0009086 (LandPlants) Phylogenetic Tree(s): OG_05_0009086_tree ,
OG_06_0005617 (SeedPlants) Phylogenetic Tree(s): OG_06_0005617_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00108p00058320
Cluster HCCA: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
AT3G12090 TET6 tetraspanin6 0.04 Archaeplastida
AT4G23410 TET5 tetraspanin5 0.05 Archaeplastida
GSVIVT01016305001 No alias Tetraspanin-5 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01023726001 No alias Tetraspanin-8 OS=Arabidopsis thaliana 0.02 Archaeplastida
Gb_00679 No alias Tetraspanin-8 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Gb_25198 No alias Tetraspanin-8 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Gb_26509 No alias Protein TORNADO 2 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os02g12750.1 No alias Tetraspanin-2 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os05g03530.1 No alias Tetraspanin-6 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os06g37510.1 No alias Tetraspanin-2 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os08g16050.1 No alias Tetraspanin-7 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os10g35980.1 No alias Tetraspanin-10 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Pp3c4_3550V3.1 No alias tetraspanin10 0.04 Archaeplastida
Pp3c7_23740V3.1 No alias tetraspanin8 0.03 Archaeplastida
Smo231326 No alias Tetraspanin-3 OS=Arabidopsis thaliana 0.06 Archaeplastida
Solyc03g059390.3.1 No alias Tetraspanin-2 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Solyc04g049080.4.1 No alias Tetraspanin-5 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Solyc07g006280.3.1 No alias Tetraspanin-8 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Solyc07g025510.4.1 No alias Tetraspanin-2 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc08g080730.3.1 No alias Tetraspanin-10 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e004417_P001 No alias Tetraspanin-10 OS=Arabidopsis thaliana... 0.08 Archaeplastida
Zm00001e027574_P006 No alias Tetraspanin-6 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e028243_P001 No alias Tetraspanin-6 OS=Arabidopsis thaliana... 0.1 Archaeplastida
Zm00001e029484_P001 No alias Tetraspanin-6 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e030929_P001 No alias Tetraspanin-8 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e034206_P001 No alias Tetraspanin-8 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e039133_P001 No alias Protein TORNADO 2 OS=Arabidopsis thaliana... 0.04 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004190 aspartic-type endopeptidase activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006184 obsolete GTP catabolic process IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0007155 cell adhesion IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016597 amino acid binding IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Neighborhood
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0022610 biological adhesion IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0033897 ribonuclease T2 activity IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
MF GO:0051087 chaperone binding IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
MF GO:0070001 aspartic-type peptidase activity IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR018499 Tetraspanin/Peripherin 7 246
No external refs found!