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  5. AMTR_s00109p00125300

AMTR_s00109p00125300 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00109.126

Description : Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF2 Met-tRNA binding factor complex.eIF2-alpha component


Gene families : OG0004092 (Archaeplastida) Phylogenetic Tree(s): OG0004092_tree ,
OG_05_0003934 (LandPlants) Phylogenetic Tree(s): OG_05_0003934_tree ,
OG_06_0004013 (SeedPlants) Phylogenetic Tree(s): OG_06_0004013_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00109p00125300
Cluster HCCA: Cluster_196

Target Alias Description ECC score Gene Family Method Actions
AT2G40290 No alias Eukaryotic translation initiation factor 2 subunit 1 0.03 Archaeplastida
AT5G05470 ATEIF2-A2,... eukaryotic translation initiation factor 2 alpha subunit 0.03 Archaeplastida
Cre12.g490000 No alias Protein biosynthesis.translation... 0.03 Archaeplastida
GSVIVT01032762001 No alias Protein biosynthesis.translation... 0.04 Archaeplastida
LOC_Os03g18510.1 No alias component eIF2-alpha of eIF2 Met-tRNA binding factor complex 0.04 Archaeplastida
MA_10428764g0010 No alias component eIF2-alpha of eIF2 Met-tRNA binding factor complex 0.02 Archaeplastida
MA_12897g0020 No alias component eIF2-alpha of eIF2 Met-tRNA binding factor complex 0.02 Archaeplastida
Solyc03g095840.3.1 No alias component eIF2-alpha of eIF2 Met-tRNA binding factor complex 0.03 Archaeplastida
Zm00001e001345_P001 No alias component eIF2-alpha of eIF2 Met-tRNA binding factor complex 0.03 Archaeplastida
Zm00001e038398_P001 No alias component eIF2-alpha of eIF2 Met-tRNA binding factor complex 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003743 translation initiation factor activity IEA Interproscan
CC GO:0005850 eukaryotic translation initiation factor 2 complex IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000775 chromosome, centromeric region IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP Neighborhood
MF GO:0003993 acid phosphatase activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
MF GO:0004576 oligosaccharyl transferase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0004828 serine-tRNA ligase activity IEP Neighborhood
MF GO:0005048 signal sequence binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006289 nucleotide-excision repair IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006434 seryl-tRNA aminoacylation IEP Neighborhood
BP GO:0006621 protein retention in ER lumen IEP Neighborhood
BP GO:0007059 chromosome segregation IEP Neighborhood
BP GO:0016255 attachment of GPI anchor to protein IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
BP GO:0019725 cellular homeostasis IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
CC GO:0031966 mitochondrial membrane IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
BP GO:0032507 maintenance of protein location in cell IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0035299 inositol pentakisphosphate 2-kinase activity IEP Neighborhood
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
BP GO:0042592 homeostatic process IEP Neighborhood
CC GO:0042765 GPI-anchor transamidase complex IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
BP GO:0045185 maintenance of protein location IEP Neighborhood
BP GO:0045454 cell redox homeostasis IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
MF GO:0046923 ER retention sequence binding IEP Neighborhood
BP GO:0051235 maintenance of location IEP Neighborhood
BP GO:0051301 cell division IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0051651 maintenance of location in cell IEP Neighborhood
BP GO:0065008 regulation of biological quality IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0072595 maintenance of protein localization in organelle IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098687 chromosomal region IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
InterPro domains Description Start Stop
IPR003029 S1_domain 19 92
IPR011488 TIF_2_asu 129 260
No external refs found!