AMTR_s00110p00069670 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00110.33

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS19 component

Gene families : OG0002393 (Archaeplastida) Phylogenetic Tree(s): OG0002393_tree ,
OG_05_0002411 (LandPlants) Phylogenetic Tree(s): OG_05_0002411_tree ,
OG_06_0002523 (SeedPlants) Phylogenetic Tree(s): OG_06_0002523_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00110p00069670
Cluster	HCCA: Cluster_50

Target	Alias	Description	ECC score	Gene Family Method
AT3G02080	No alias	Ribosomal protein S19e family protein	0.18	Archaeplastida
AT5G15520	No alias	Ribosomal protein S19e family protein	0.1	Archaeplastida
AT5G61170	No alias	Ribosomal protein S19e family protein	0.26	Archaeplastida
Cpa\|evm.model.tig00021017.6	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.1	Archaeplastida
Cre02.g106600	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.27	Archaeplastida
GSVIVT01007908001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.2	Archaeplastida
GSVIVT01012199001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.23	Archaeplastida
Gb_40460	No alias	component RPS19 of SSU proteome	0.1	Archaeplastida
LOC_Os03g31090.1	No alias	component RPS19 of SSU proteome	0.17	Archaeplastida
MA_10427917g0010	No alias	component RPS19 of SSU proteome	0.21	Archaeplastida
MA_7685779g0010	No alias	component RPS19 of SSU proteome	0.03	Archaeplastida
MA_9301411g0010	No alias	component RPS19 of SSU proteome	0.15	Archaeplastida
Mp1g27380.1	No alias	component RPS19 of SSU proteome	0.26	Archaeplastida
Pp3c14_19640V3.1	No alias	Ribosomal protein S19e family protein	0.23	Archaeplastida
Pp3c17_15200V3.1	No alias	Ribosomal protein S19e family protein	0.1	Archaeplastida
Pp3c1_28780V3.1	No alias	Ribosomal protein S19e family protein	0.2	Archaeplastida
Pp3c27_2780V3.1	No alias	Ribosomal protein S19e family protein	0.01	Archaeplastida
Pp3c2_10060V3.1	No alias	Ribosomal protein S19e family protein	0.19	Archaeplastida
Smo153225	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.15	Archaeplastida
Solyc03g115360.3.1	No alias	component RPS19 of SSU proteome	0.18	Archaeplastida
Solyc12g039120.2.1	No alias	component RPS19 of SSU proteome	0.19	Archaeplastida
Zm00001e002011_P001	No alias	component RPS19 of SSU proteome	0.21	Archaeplastida
Zm00001e038053_P003	No alias	component RPS19 of SSU proteome	0.25	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	Interproscan
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	Neighborhood
BP	GO:0000154	rRNA modification	IEP	Neighborhood
MF	GO:0000179	rRNA (adenine-N6,N6-)-dimethyltransferase activity	IEP	Neighborhood
CC	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0005048	signal sequence binding	IEP	Neighborhood
MF	GO:0005509	calcium ion binding	IEP	Neighborhood
MF	GO:0005544	calcium-dependent phospholipid binding	IEP	Neighborhood
CC	GO:0005758	mitochondrial intermembrane space	IEP	Neighborhood
CC	GO:0005759	mitochondrial matrix	IEP	Neighborhood
CC	GO:0005786	signal recognition particle, endoplasmic reticulum targeting	IEP	Neighborhood
BP	GO:0006414	translational elongation	IEP	Neighborhood
BP	GO:0006605	protein targeting	IEP	Neighborhood
BP	GO:0006612	protein targeting to membrane	IEP	Neighborhood
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	Neighborhood
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	Neighborhood
BP	GO:0006621	protein retention in ER lumen	IEP	Neighborhood
BP	GO:0006825	copper ion transport	IEP	Neighborhood
MF	GO:0008312	7S RNA binding	IEP	Neighborhood
MF	GO:0008649	rRNA methyltransferase activity	IEP	Neighborhood
CC	GO:0015934	large ribosomal subunit	IEP	Neighborhood
BP	GO:0015985	energy coupled proton transport, down electrochemical gradient	IEP	Neighborhood
BP	GO:0015986	ATP synthesis coupled proton transport	IEP	Neighborhood
MF	GO:0016433	rRNA (adenine) methyltransferase activity	IEP	Neighborhood
MF	GO:0016530	metallochaperone activity	IEP	Neighborhood
MF	GO:0016531	copper chaperone activity	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
MF	GO:0030942	endoplasmic reticulum signal peptide binding	IEP	Neighborhood
CC	GO:0031970	organelle envelope lumen	IEP	Neighborhood
CC	GO:0031974	membrane-enclosed lumen	IEP	Neighborhood
BP	GO:0032507	maintenance of protein location in cell	IEP	Neighborhood
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	Neighborhood
MF	GO:0033218	amide binding	IEP	Neighborhood
BP	GO:0033365	protein localization to organelle	IEP	Neighborhood
BP	GO:0035437	maintenance of protein localization in endoplasmic reticulum	IEP	Neighborhood
MF	GO:0042277	peptide binding	IEP	Neighborhood
CC	GO:0043233	organelle lumen	IEP	Neighborhood
CC	GO:0044391	ribosomal subunit	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044429	mitochondrial part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
CC	GO:0044455	mitochondrial membrane part	IEP	Neighborhood
BP	GO:0045047	protein targeting to ER	IEP	Neighborhood
BP	GO:0045185	maintenance of protein location	IEP	Neighborhood
CC	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	IEP	Neighborhood
MF	GO:0046923	ER retention sequence binding	IEP	Neighborhood
CC	GO:0048500	signal recognition particle	IEP	Neighborhood
BP	GO:0051235	maintenance of location	IEP	Neighborhood
BP	GO:0051651	maintenance of location in cell	IEP	Neighborhood
CC	GO:0070013	intracellular organelle lumen	IEP	Neighborhood
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	Neighborhood
BP	GO:0072594	establishment of protein localization to organelle	IEP	Neighborhood
BP	GO:0072595	maintenance of protein localization in organelle	IEP	Neighborhood
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	Neighborhood
BP	GO:0072657	protein localization to membrane	IEP	Neighborhood
BP	GO:0090150	establishment of protein localization to membrane	IEP	Neighborhood
CC	GO:0098798	mitochondrial protein complex	IEP	Neighborhood
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	Neighborhood
MF	GO:0140102	catalytic activity, acting on a rRNA	IEP	Neighborhood
MF	GO:0140104	molecular carrier activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001266	Ribosomal_S19e	5	134

External Links

No external refs found!

AMTR_s00110p00069670 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation